Physical Chemistry 2 nd Edition Thomas Engel, Philip Reid Chapter 25 Electronic Spectroscopy

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Objectives Understanding of electronic transitions

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Outline 1.The Energy of Electronic Transitions 2.Molecular Term Symbols 3.Transitions between Electronic States of Diatomic Molecules 4.The Vibrational Fine Structure of Electronic Transitions in Diatomic Molecules 5.UV-Visible Light Absorption in Polyatomic Molecules 6.Transitions among the Ground and Excited States 7. Singlet–Singlet Transitions: Absorption and Fluorescence

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Outline 8.Intersystem Crossing and Phosphorescence 9.Fluorescence Spectroscopy and Analytical Chemistry 10.Ultraviolet Photoelectron Spectroscopy 11.Single Molecule Spectroscopy 12.Fluorescent Resonance Energy Trasfer (Fret) 13.Linear and Circular Dichroism

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.1 The Energy of Electronic Transitions Electronic excitations are responsible for giving color to the objects we observe. UV-visible spectroscopy provides a very useful qualitative tool for identifying molecules and determine energy levels in molecules.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.2 Molecular Term Symbols In electronic excitations, molecular term describe the electronic states of molecules. L and S (M L and M S ) is chosen to be the z axis, and S are to specify individual states in diatomic molecules. where m li, m ls = z components of orbital and spin angular momentum for the i th electron in its molecular orbital.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Example 25.1 What is the molecular term symbol for the H 2 molecule in its ground state? In its first two excited states?

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Example 25.1 In the ground state, the H 2 molecule is described by the (1σ g ) 2 configuration. For both electrons, ml=0. Therefore, Λ=0, and we are dealing with a Σ term. Because of the Pauli principle, one electron has ms=+1/2 and the other has m s =-1/2. Therefore, M S =0 and it follows that S=0. It remains to be determined whether the MO has g or u symmetry. Each term in the antisymmetrized MO is of the form σ g x σ g. Recall that the products of two even or odd functions is even, and the product of an odd and an even function is odd.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Example 25.1 Therefore, the product of two g (or two u) functions is a g function, and the ground state of the H2 molecule is 1 Σ g In the first excited state, the configuration is (1σ g )(1σ u ), and because the electrons are in separate MOs, this configuration leads to both singlet states and triplet states. Again, because m l =0 for both electrons, we are dealing with a Σ term.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Example 25.1 Because the two electrons are in different MOs, for each electron, giving m s values of -1, 0 (twice), and +1. This is consistent with S=1 and S=0. Because the product of a u and a g function is a u function, both singlet and triplet states are u functions. Therefore, the first two excited states are described by the terms 3 Σ u and 1 Σ u. Using Hund’s first rule, we conclude that the triplet state is lower in energy than the singlet state.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.3 Transitions Between Electronic States of Diatomic Molecules Diatomic molecules have spacing between the various rotational-vibrational-electronic states which is large to allow individual states to be resolved. Each of the molecular bound states of O 2 has well-defined vibrational and rotational energy levels.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.4 The Vibrational Fine Structure of Electronic Transitions in Diatomic Molecules Vibrational and rotational quantum numbers can change during electronic excitation. Born-Oppenheimer approximation can be used to determine vibrational transition between electronic states. where R 1,…,R m depends on position of the nuclei r 1,…r n depends on the position of electrons

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.4 The Vibrational Fine Structure of Electronic Transitions in Diatomic Molecules Franck-Condon principle states that transitions between electronic states correspond to vertical lines on an energy versus inter-nuclear distance diagram. Electronic transitions occur on a timescale that is very short compared to the vibrational period of a molecule

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.5 UV-Visible Light Absorption in Polyatomic Molecules Rotational and vibrational transitions are possible if an electronic transition occurs in polyatomic molecules. The concept of chromophores is useful for electronic spectroscopy of polyatomic molecules. A chromophore is a chemical entity embedded within a molecule that absorbs radiation at the same wavelength in different molecules.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.5 UV-Visible Light Absorption in Polyatomic Molecules The intensity of absorption for (a) an atom, (b) a diatomic molecule, and (c) a polyatomic molecule.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.5 UV-Visible Light Absorption in Polyatomic Molecules The energy difference between the initial and final states determines the frequency of the spectral line. The energy increases in the sequence n  π*, π  π*, and σ  σ*.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.6 Transitions among the Ground and Excited States There are possible transitions among the ground and excited electronic states.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.6 Transitions among the Ground and Excited States The 2 types of transitions are: Radiative transitions - photon is absorbed/emitted Nonradiative transitions - energy transferred between molecule to the surroundings

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.7 Singlet–Singlet Transitions: Absorption and Fluorescence Beer’s law is used to quantify what is meant by strong and weak absorption. where I 0 = incident light intensity at frequency of interest I t = intensity of transmitted light c = concentration l = path length ε = strength of the transition (molar extinction coefficient)

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.7 Singlet–Singlet Transitions: Absorption and Fluorescence Integral absorption coefficient is a measure of the probability that an incident photon will be absorbed in a specific electronic transition.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.8 Intersystem Crossing and Phosphorescence Probability of intersystem crossing transitions is enhanced by two factors: similar molecular geometry in the excited singlet and triplet states. Fluorescence spectroscopy is good for detecting chemical species if wavelength of the emission lies in the visible-UV where there is little noise near room temperature.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.9 Fluorescence Spectroscopy and Analytical Chemistry The goal of the human genome is to determine the four bases, A, C, T, and G, in DNA that encode all the genetic information. Laser-induced fluorescence spectroscopy consist of 3 parts: a)DNA cut into small pieces, replicate many copies, and put into A, C, T and G mixture to modified the bases. b)Lengths of the partial replicas measured using capillary electrophoresis

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy 25.9 Fluorescence Spectroscopy and Analytical Chemistry c)Measure the time for each of the partial replicas spent in capillary, to determines length and terminating base.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Ultraviolet Photoelectron Spectroscopy Spectroscopy gives information on the energy difference between initial and final states, but not transition energy level. UV photoelectron spectroscopy is to identify the orbital energy level from which an electronic transition originates.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Ultraviolet Photoelectron Spectroscopy The kinetic energy of ejected electron is the total energy required to form the positive ion via photoionization, by where E f = energy of the cation

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Ultraviolet Photoelectron Spectroscopy Koopmans’ theorem states the 3 assumptions for E f equal to ε orbital : a)Nuclear positions are unchanged in the transition (Born-Oppenheimer approximation). b)Orbitals for the atom and ion are the same (frozen orbital approximation). c)Total electron correlation energy in the molecule and ion are the same.

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Single Molecule Spectroscopy The “true” absorption band for an individual molecule is observed only if the number of molecules in the volume being sampled is very small Conformation of a biomolecule is the arrangement of its constituent atoms in space Primary structure is determined by the backbone of the molecule Tertiary structure refers to the overall shape of the molecule

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Single Molecule Spectroscopy

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Fluroscent Resonance Energy Transfer (FRET) FRET is a form of single molecule spectroscopy that has proved to be very useful in studying biochemical systems Resonance energy transfer is where the emission spectrum of the donor overlaps the absorption spectrum of the acceptor Theodor Förster states that

© 2010 Pearson Education South Asia Pte Ltd Physical Chemistry 2 nd Edition Chapter 25: Electronic Spectroscopy Linear and Circular Dichroism Transition dipole moment is defined by The arrows in successive images indicate the direction of the electric field vector as a function of time or distance In linear dichroism spectroscopy, the variation of the absorbance with the orientation of plane-polarized light is measured