Using ‘LATENT’ Information In Hazard Identification Albert Leo BioByte Corp. McKim Conference 2006 Oxford Dictionary: Latent: "existing in hidden, dormant.

Slides:



Advertisements
Similar presentations
Acids & Bases How We Measure Acids and Bases pH Blue Base.
Advertisements

Analysis of Residues. Laboratory Analysis of Debris and Other Samples 1. Preparation of Liquid Samples: Liquid samples are simply drawn into a special.
CHEM 5013 Applied Chemical Principles
Lipinski’s rule of five
9-Performing Vulnerability Assessments Dr. John P. Abraham Professor UTPA.
A 1 A 2 A 3 A 4 B B B
Quantitative Structure-Activity Relationships (QSAR) Comparative Molecular Field Analysis (CoMFA) Gijs Schaftenaar.
1 The Chemistry of Life Mark Mayo Cypress College Last update 9/10/13.
IMS1805 Systems Analysis Topic 2: Introduction to some key techniques for systems analysis in IS.
Lecture 2b. Electromagnetic Spectrum Visible range: = nm Ultraviolet: = nm Low energyHigh energy.
Enzymes. Definition of an enzyme Enzymeprotein Enzyme is protein catalystincrease the rate of reactions catalyst (i.e. increase the rate of reactions)
Quantitative Structure-Activity Relationships (QSAR)  Attempts to identify and quantitate physicochemical properties of a drug in relation to its biological.
Weak Bases Many substances behave as weak bases in water React with water removing protons from the H 2 O thus forming OH - ions Weak Base + H 2 O 
Environmental Processes Partitioning of pollutants 3.i Sorption involving organic matter (between air/soil and water/soil)
Molecular Descriptors
Pharmacy 325 Infrared (IR) Spectroscopy Dr. David Wishart Rm Ph Hours: anytime after 4 pm.
Linking Levels, Learning outcomes and assessment Jenny Moon, Bournemouth University, UK
Fundamental processes in soil, atmospheric and aquatic systems 2(ii) Partitioning.
Institute of Plant Protection National Research Institute Sośnicowice Branch Warszawa, nd International Conference COUNTERFEITING AND OTHER.
Optimizing Target Interactions
LOGS EQUAL THE The inverse of an exponential function is a logarithmic function. Logarithmic Function x = log a y read: “x equals log base a of y”
PHYSICOCHEMICAL PRINCIPLES OF DRUG ACTION
European Broadband Portal Phase II Application of the Blueprint for “bottom-up” broadband initiatives.
Strategies and Implications for Integrating GeoSpatial Technologies in Emergency Management Education Programs – New Directions and Possibilities National.
Développement "IN SILICO" de nouveaux extractants et complexants de métaux Alexandre Varnek Laboratoire d’Infochimie, Université Louis Pasteur, Strasbourg,
Quantitative Structure Activity Relationship (QSAR)
Drug Discovery & Development
3D- QSAR. QSAR A QSAR is a mathematical relationship between a biological activity of a molecular system and its physicochemical parameters. QSAR attempts.
Can You Differentiate the Ammonia Oxidizers
Condensation Reactions Two molecules combine with the generation of a smaller molecule.
OPENQUAKE Mission and Vision It is GEM’s mission to engage a global community in the design, development and deployment of state-of-the-art models and.
Miscellaneous examples 1. Given that a = log 10 2 and b = log 10 5, find expressions in terms of a and b for: (i) log (ii) log (iii) log 10.
Prentice Hall ©2004 Chapter 14 Aqueous Equilibria: Acids & Bases by Dr Ayesha Mohy-ud-din.
Waste Management and Research Center Waste Management and Research Center l Formed in 1984 l IL Dept of Natural Resources l Located at University of Illinois.
Spectroscopy Chemistry 3.2: Demonstrate understanding of spectroscopic data in chemistry (AS 91388)
Prodrugs Medicinal Chemistry I 1. Prodrugs  Are inactive compounds converted to the active form in vivo.  Useful for drugs with undesirable physicochemical.
Lipophilicity & Permeability 김연수. Chapter 5. Lipophilicity.
Land and Water Resource Information Systems By David R. Maidment Center for Research in Water Resources University of Texas at Austin Presented at UN.
Chapter 14 Acids and Bases. Copyright © Houghton Mifflin Company. All rights reserved.CRS Question, 14–2 QUESTION Aniline, C 6 H 5 NH 2, was isolated.
McKim Conference on Predictive Toxicology The Inn of Lake Superior Duluth, Minnesota September 25-27, 2007 Narcosis as a Reference Gilman Veith.
Acids and Bases. Dissociation of Strong Bases  Strong bases are metallic hydroxides  Group I hydroxides (NaOH, KOH) are very soluble  Group II hydroxides.
Mitochondria QSARs Involving Chemical Effects
Introduction to Logarithms Chapter 8.4. Logarithmic Functions log b y = x if and only if b x = y.
Part 2. Physicochemical Properties 1.Rules ( 양혜란 ) 2.Liphophilicity ( 백아름 ) 3.pKa ( 박숙진 ) 4.Solubility ( 전종수, 최영재 ) 5.Permeability ( 김소연, 강경태 )
Transporters Lee,Sang-Hwi. 9.1 Transporter Fundamentals Physicochemical properties lipophilicity hydrogen bonds M.W. Toxic xenobiotics (drugs)
Chapter 15: Acids and Bases Bronsted Lowry Acids HCl  H + (aq) + Cl - (aq) HNO 3  H + (aq) + NO 3 - (aq) HC 2 H 3 O 2  H + (aq) + C 2 H 3 O 2 - (aq)
Goals:  Understand logarithms as the inverse of exponents  Convert between exponential and logarithmic forms  Evaluate logarithmic functions.
PH. Ionization of Water  When compounds dissociate/ionize in an aqueous solution, they produce ions - hydronium (H 3 O + ) and hydroxide (OH - )  These.
Lipinski’s rule of five
DRUG DESIGN: OPTIMIZING TARGET INTERACTIONS
Chapter 4: Chemical Quantities & Aqueous Reactions
Overview Conventional Farming Organic farming
Medicinal Chemistry III
Percentage Composition
WATER, ELECTROLYTES, AND ACID-BASE BALANCE
Transformations.
Enzymes.
Section 18.2 Strengths of Acids and Bases
Chapter 16 Amino Acids, Proteins, and Enzymes
Consortium: National networks in 16 European countries.
New compounds with improved biological activity
The Organization of Living Things
Calculating pH and pOH.
Topics are: Solving exponential equations
Consortium: National networks in 16 European countries.
Carboxylic Acid Derivatives
Karen E.S. Tang, Victor A. Bloomfield  Biophysical Journal 
Enzymes.
Bases Sodium hydroxide Preferred IUPAC name Systematic name
Unit 5- lecture 5 Using the pH scale to characterize acids and bases.
Presentation transcript:

Using ‘LATENT’ Information In Hazard Identification Albert Leo BioByte Corp. McKim Conference 2006 Oxford Dictionary: Latent: "existing in hidden, dormant or repressed form, but usually capable of being evoked, expressed, or brought to light."

CLOGP calculations are based on fundamental Physico-Chemical principles, but this information in Calculation Details is seldom viewed or used--only the “bottom line.” The CQSAR database of over 13,000 bio- and over 7,000 PChem equations has needed a friendly MAP to guide users to their special needs. BioLoom and QSAR-Search aim to bring this ‘Latency’ to Light.

2,6-di-isopropyl Aniline Hindered access: Hindered access: Favors water over octanol Favors water over octanol May effect transformation to hydroxylamine or N-nitrosoamine. May effect transformation to hydroxylamine or N-nitrosoamine. HBA = 0.41

QSARs on Oxidoreductase Total = 982 (176 with Verloop B1 or B5; 37 with Taft Es) MAO = 24 (6 with B1; 1 with B5; 1 with Taft Es)

Ground water contaminant in San Antonio, TX.

Other QSARs of special interest in hazard assessment would be: #10440, BBB penetration; #6777, heart cell communication; #6121, soil absorption; #3609, fungicidal strength.

The A & D of ADME Log K = CLOGP CLOGP n = 117; r 2 = 0.81; SD = 0.23; Opt. Log P = 2.83 Baseline for Intestinal Absorption

Over 13 log units correction for fragment interaction.

“Eschew Obfuscation” Motto:

4 of 48 hits: one Carbamoyl-Oxime; Three Phosphonate Esters (all are ACCHE inhibitors and structural alerts).

Will yield 31 hits.

Herbicides all have NH attached at 2 position; if attached elsewhere, it results in other activities.

With pyridine as second compound, it yields 33 hits. When SO 2 is attached meta on pyridine, it is a diuretic; if pyrimidine also present and -NH is 2 attached, it is a herbicide.

With imidazole as second compound: 10 hits. Angiotensin II (antihypertensives) all have acid or amide on imidazole and -SO 2 attachment on biphenyl group.

Acknowledgments Prof. Corwin Hansch Prof. Toshio Fujita Dr. Gilman Veith Dr. Alka Kurup David Hoekman Plus dozens of European and Asian colleagues who spent their Sabbaticals at Pomona College and the dozens of Post-Doctorals who labored at the task of converting literature data into the C-QSAR database.

SoluteHBD Antipyrene0.00 Ethylene glycol0.50 Thymine0.80 Urea0.84 Thiourea0.84 Sucrose2.64* Sucrose0.90** *Abraham’s values if additive **If % HBD loss same as HBA loss CLOGP range: 7.7 log units (-3.09 to +4.68) Platt-Abraham larger set: Log BB = E S – 0.564A – 0.731B Vx I1 n = 148; r 2 = 0.745; s = 0.343