Expression Data Generation and Collection at MPIMG and RZPD Resource Center within the German Human Genome Project Steffen Schulze-Kremer
Background History 1987 first spotting system (EMBL,ICRF) ~1989 complex cDNA Hybridisations to arrays ~1989 onward distribution of arrays in reference library system
RZPD Database Objectives (since 95) To support dissemination of variety of biological materials Clones Filters Pools To collect and redistribute biological primary data Hybridisations Sequences Phenotypes
RZPD Database Coverage Biological Information Clones Libraries Genes Sequences Hybridisation Logistic Information Clone storage Library re-arraying Filters Accounting Information Customers Orders / requests Affiliation (DHGP?) Price lists Information Integration Confidential information Links to other databases Query Visualisation
RZPD Database Contents (Oct 5/99) Biological Information clones master clones 319 libraries filters sequences hybridisations Blast hits distinct targets hit Accounting Information 5551 registered users 1228 organisations 630 German 598 foreign # RZPD orders (in RLDB) clones (4405) 3610 filters (1468) 1118 pools (0) Submissions sequences (DHGP) sequences (other)
Graphical Filter Display Tool
Database Components Oracle / Unix DEC Alpha 8 Processor Server Secure Web Server protects confidential information during transit different roles available customised views OPM Tools some 80 object classes class browser query editor
OPM Schema Browser
Hybridisation Data in RZPD
Laboratory Database at MPIMG
Dictionaries
„Owned Objects“
„Result“ „Experiment“ „Result“ „Experiment“ Lab Database Development Team at MPIMG Dr. Arif Malik, Axel Nagel, Dr. Holger Eickhoff
RZPD Distribution Service, Database & Bioinformatics Team ( Distribution Service Nadja Pohl, Eva Partsch, Patience Frederick, Maryam Sabet Registration Radka Kochan System Administration Klaus Dobrindt, Robert Fürst Data Submission Dr. Andreas Hewelt Protein Structure Factory Dr. Jörn Quedenau, Ursula Meyhoefer Database Managers Karsten R. Heidtke, Peter Neubert Web Designer Iris A. Bertram Application Programmers Elisabeth Maschke, Ralf Mühlhaus Students Falco Ripsas, Katja Wegner Informatics Manager Dr. Steffen Schulze-Kremer