Q-exponential distribution in time correlation function of water hydrogen bonds Campo, Mario G., Ferri, Gustavo L., Roston, Graciela B. Departamento de.

Slides:



Advertisements
Similar presentations
Anomalies of water and simple liquids Zhenyu Yan Advisor: H. Eugene Stanley Collaborators: Sergey V. Buldyrev, Pablo G. Debenedetti, Nicolas Giovambattista,
Advertisements

Gelation Routes in Colloidal Systems Emanuela Zaccarelli Dipartimento di Fisica & SOFT Complex Dynamics in Structured Systems Università La Sapienza, Roma.
Time fluctuations in density and dielectric constant of low and high density liquid water ERIK LASCARIS, Boston University Cui Zhang, UC Davis Giulia A.
Zoe Cournia 25 October 2004 Cholesterol vs. Ergosterol / Lanosterol in Membrane S(t)imulations.
Transfer FAS UAS SAINT-PETERSBURG STATE UNIVERSITY COMPUTATIONAL PHYSICS Introduction Physical basis Molecular dynamics Temperature and thermostat Numerical.
Part I Part II Outline. Thermodynamics in the IS formalism Stillinger- Weber F(T)=-T S conf (, T) +f basin (,T) with f basin (e IS,T)= e IS +f vib (e.
Bare Surface Tension and Surface Fluctuations of Clusters with Long–Range Interaction D.I. Zhukhovitskii Joint Institute for High Temperatures, RAS.
Puentes de Hidrógeno. Intermolecular Forces 11.2 Intermolecular forces are forces between molecules. Intramolecular forces hold atoms together in a molecule.
(random-orientation)
Anisimov/Sengers Research Group HOW PURE WATER CAN UNMIX Mikhail Anisimov Institute for Physical Science &Technology and Department of Chemical.
1 Relaxation and Transport in Glass-Forming Liquids Motivation (longish) Democratic motion Conclusions G. Appignanesi, J.A. Rodríguez Fries, R.A. Montani.
Examining the crossover between the hadronic and partonic phases in QCD and the structure of sQGP Xu Mingmei( 许明梅 ), Yu Meiling( 喻梅凌 ), Liu Lianshou( 刘连寿.
Unusual phase behavior in one-component system with isotropic interaction Limei Xu WPI-AIMR, Tohoku University, Japan WPI-AIMR, Tohoku University, Japan.
Structural Order for One-Scale and Two-Scale Potentials Zhenyu Yan Advisor: H. Eugene Stanley Collaborators: Sergey V. Buldyrev, Nicolas Giovambattista,
Orleans July 2004 Potential Energy Landscape in Models for Liquids Networks in physics and biology In collaboration with E. La Nave, A. Moreno, I. Saika-Voivod,
A Monatomic System with a Liquid-Liquid Critical Point and Two Distinct Glassy States Sergey Buldyrev Department of Physics Yeshiva University Collaborators:
Coherent Manipulation and Decoherence of S=10 Fe8 Single- Molecule Magnets Susumu Takahashi Physics Department University of California Santa Barbara S.
Faceting Transition of Gold Nano Materials Yanting Wang Advisors: Prof. Stephen Teitel, Prof. Christoph Dellago May 22, 2003 Department of Physics and.
Atomistic Mechanism for Grain Boundary Migration: Molecular Dynamics Studies Hao Zhang a, David J. Srolovitz a, Jack F. Douglas b, and James A. Warren.
STATISTICAL PROPERTIES OF THE LANDSCAPE OF A SIMPLE STRONG LIQUID MODEL …. AND SOMETHING ELSE. E. La Nave, P. Tartaglia, E. Zaccarelli (Roma ) I. Saika-Voivod.
1 Femtosecond Time and Angle-Resolved Photoelectron Spectroscopy of Aqueous Solutions Toshinori Suzuki Kyoto University photoelectron.
1 DIELECTRIC RELAXATION IN POROUS MATERIALS Yuri Feldman Tutorial lecture 5 in Kazan Federal University.
Max Shokhirev BIOC585 December 2007
Liquid-Liquid Phase Transitions and Water-Like Anomalies in Liquids Erik Lascaris Final oral examination 9 July
Algorithms and Software for Large-Scale Simulation of Reactive Systems _______________________________ Ananth Grama Coordinated Systems Lab Purdue University.
Shai Carmi Bar-Ilan, BU Together with: Shlomo Havlin, Chaoming Song, Kun Wang, and Hernan Makse.
Unusual phase behaviour in one- component systems with isotropic interactions Limei Xu WPI-AIMR, Tohoku University, Japan WPI-AIMR, Tohoku University,
Marco G. Mazza Thesis Defense Boston – April Advisor: H. Eugene Stanley Role of orientational dynamics in supercooled water.
On independence of the solvation of interaction sites of a water molecule M. Předota 1, A. Ben-Naim 2, I. Nezbeda 1,3 1 Institute of Chemical Process Fundamentals,
DNA ‘glass transition’ and the LL critical point of water --- a simulation study.
Monte Carlo Simulation of Liquid Water Daniel Shoemaker Reza Toghraee MSE 485/PHYS Spring 2006.
The Study of Noble Gas – Noble Metal Halide Interactions: Fourier Transform Microwave Spectroscopy of XeCuCl Julie M. Michaud and Michael C. L. Gerry University.
Chapter 12 Liquids, Solids, and Intermolecular Forces.
Vibrational Relaxation of CH 2 ClI in Cold Argon Amber Jain Sibert Group 1.
Critical Scaling of Jammed Systems Ning Xu Department of Physics, University of Science and Technology of China CAS Key Laboratory of Soft Matter Chemistry.
Rosa Ramirez ( Université d’Evry ) Shuangliang Zhao ( ENS Paris) Classical Density Functional Theory of Solvation in Molecular Solvents Daniel Borgis Département.
Dynamics of phase transitions in ion traps A. Retzker, A. Del Campo, M. Plenio, G. Morigi and G. De Chiara Quantum Engineering of States and Devices: Theory.
Relaxation dynamics of water in the aqueous mixtures of propylene glycol oligomers at ambient and elevated pressure 6 th International Discussion Meeting.
Intrinsic Mean Square Displacements in Proteins Henry R. Glyde Department of Physics and Astronomy University of Delaware, Newark, Delaware JINS-ORNL.
1 M.Sc. Project of Hanif Bayat Movahed The Phase Transitions of Semiflexible Hard Sphere Chain Liquids Supervisor: Prof. Don Sullivan.
Study of Pentacene clustering MAE 715 Project Report By: Krishna Iyengar.
¶ CNISM-Dipartimento di Fisica “A. Volta,” Università di Pavia, Pavia, (Italy) ║ Max Planck Institute for Chemical Physics of Solids, Dresden,
The Gas State  Gases are everywhere – atmosphere, environmental processes, industrial processes, bodily functions  Gases have unique properties from.
A Technical Introduction to the MD-OPEP Simulation Tools
Molecular Dynamics Study of Aqueous Solutions in Heterogeneous Environments: Water Traces in Organic Media Naga Rajesh Tummala and Alberto Striolo School.
Molecular Dynamics Simulations of Compressional Metalloprotein Deformation Andrew Hung 1, Jianwei Zhao 2, Jason J. Davis 2, Mark S. P. Sansom 1 1 Department.
Rotational spectra of molecules in small Helium clusters: Probing superfluidity in finite systems F. Paesani and K.B. Whaley Department of Chemistry and.
A 4D wave packet study of the CH 3 I photodissociation in the A band. Comparison with femtosecond velocity map imaging experiments A. García-Vela 1, R.
1/20 Boris Tomášik: Fragmentation of the Fireball and its Signatures Boris Tomášik Univerzita Mateja Bela, Banská Bystrica, Slovakia Czech Technical University,
Comparative Study of NAMD and GROMACS
Insight into peptide folding role of solvent and hydrophobicity dynamics of conformational transitions.
Víctor M. Castillo-Vallejo 1,2, Virendra Gupta 1, Julián Félix 2 1 Cinvestav-IPN, Unidad Mérida 2 Instituto de Física, Universidad de Guanajuato 2 Instituto.
M. Onofri, F. Malara, P. Veltri Compressible magnetohydrodynamics simulations of the RFP with anisotropic thermal conductivity Dipartimento di Fisica,
Thermal Surface Fluctuations of Clusters with Long-Range Interaction D.I. Zhukhovitskii Joint Institute for High Temperatures, RAS.
Chapter 5 – Gases. In Chapter 5 we will explore the relationship between several properties of gases: Pressure: Pascals (Pa) Volume: m 3 or liters Amount:
Inverse melting and phase behaviour of core-softened attractive disks
Alessandro Cunsolo INFM Operative Group in Grenoble and CRS-Soft, c/o Institut Laue-Langevin, Grenoble, France On the new opportunities opened by the development.
Chapter 12 Liquids, Solids, and Intermolecular Forces.
Interacting Molecules in a Dense Fluid
The Boltzmann Distribution allows Calculation of Molecular Speeds Mathematically the Boltzmann Distribution says that the probability of being in a particular.
MD (here)MD*EXP (kcal/mole)  (D) D (cm/s) 298K ENHANCED H ION TRANSPORT AND HYDRONIUM ION FORMATION T. S. Mahadevan.
Molecular dynamics (4) Treatment of long-range interactions Computing properties from simulation results.
Förster Resonance Energy Transfer (FRET)
Marco G. Mazza Departmental Seminar Boston – February Acknowledgements: Kevin Stokely, BU Elena G. Strekalova, BU Giancarlo Franzese, Universitat.
High-resolution mid-infrared spectroscopy of deuterated water clusters using a quantum cascade laser- based cavity ringdown spectrometer Jacob T. Stewart.
1 Glass and Time – DNRF Centre for Viscous Liquid Dynamics, Roskilde University Strongly correlating liquids and their isomorphs - Simple liquids [van.
MD Studies of LDL and HDL phases of Supercooled Water
Kinetic Molecular Theory
Chapter 4 Mechanisms and Models of Nuclear Reactions
On the Temperature and Pressure Dependence of a Range of Properties of a Type of Water Model Commonly Used in High-Temperature Protein Unfolding Simulations 
Presentation transcript:

q-exponential distribution in time correlation function of water hydrogen bonds Campo, Mario G., Ferri, Gustavo L., Roston, Graciela B. Departamento de Física. Facultad de Ciencias Exactas y Naturales de la UNLPam. Uruguay 151. Santa Rosa (L.P.) Argentina. UNIVERSIDAD NACIONAL DE LA PAMPA Facultad de Ciencias Exactas y Naturales V Workshop de Mecánica Estadística y Teoría de la Información – Mar del Plata – Abril 2009

Water structure: What’s hydrogen bond? HB in water is ~90% electrostatic and ~ 10% covalent. HB restricts the water neighboring. The HB direction is that of the shorter O-H (O donor – O aceptor ) A B H Hydrogen bond (HB) In water the HB energy ~23.3 kJ mol-1 compared with kJ mol -1 energy in covalent bond.

Two criteria to define HB: Energetic: O-O distance  3.5 Å O-O interaction energy > E HB Geometric O-O distance  3.5 Å O-H…O angle >  HB

Water structure: HB distribution Water is connected by a random tetrahedral network of HB. HB distribution.

Arrhenius behavior of  HB depolarized light scattering experiments Molecular dynamics What’s the importance of the hydrogen bonds? Starr F.W., Nielsen J.K., and Stanley H.E., Phys. Rev. Lett., 82, , (1999). Anomalous properties of water are influenced by the behavior of hydrogen bonding. 10 fs20 fs30 fs40 fs residence time =  HB is the mean of the distribution of HB lifetimes time t P(t): History-dependent HB correlation function: probability that an initially bonded pair remains bonded at all times up to time t. energetic geometric P(t) can be obtained from simulations by building a histogram of the HB residence times. Measurements of lifetimes are made depolarized light scattering techniques C.J. Montrose, et al., J. Chem. Phys. 60, 5025 (1974).

Behavior of P(t) do not have neither power-law nor exponential behavior. t/ps Starr F.W., Nielsen J.K., and Stanley H.E., “Fast and slow dynamics of hydrogen bonds in liquid water”, Phys. Rev. Lett., 82, , (1999). T K

GROMACS package. System with 1185 SPC/E water molecules. 12 independent systems at different temperatures(213 to 360 K) and 1 atm. Cut-of radius for the interaction potentials 1.3 nm. Berendsen’s bath of temperature and pressure. 2.5 ns for equilibration. 5 ns aditional simulation  results.  t simulation = 2 fs.  t data collection = 10 fs. Molecular dynamics simulation e e e

P(t) do not have neither power-law nor exponential behavior. T=273 K Dynamics due libration Geometrical definition of hydrogen bond: minimum O-O separation of 3.5 Å minimum O H· · ·O of 145° > 145° < 3.5 Å

We found that P(t) can be fitting with a q-exponential function ln 1 (x)  ln(x)

q(T) behavior ~300K q increase with the decrease of T. q~T -1 (T<300 K) T/K q  q Above 300 K, P(t) decays exponentially with T (q~1)

~270 K ~300 K Changes in the hydrogen bond structure with temperature 4 HB above the 3 and 2 HB 4 HB between the 3 and 2 HB 4 HB below of 2 HB and 3 HBs

reciprocal relation between HBs and T (similar to q(T) at T>300 K). ~300 K When T decrease, at ~ 300 K 4 HB percentages exceeds that 2 HB structural transition of [4 HB -tetrahedral structure] to [3 HB -2 HB] structure

~300 K

below 300 K there are a linear correlation between the tretrahedral structure of water and q.

Cage effect q–Gaussian distribution of the displacement of particles correlated with anomalous diffusion. [Liu and Goree, Phys. Rev. Lett. 100, (2008)] mean square displacement (MSD) Subdiffusive behavior  cage effect Cage effect occurs in SPC/E model simulations [(Chaterjee et al., J. Chem. Phys. 128, (2008)]. Cage effect increase with the decrease of T

MSD in our MD simulations Cage effect Slope < 1

The non-Gaussian behavior of the displacement of water molecules was studied calculating the time t*, the time at which the non-Gaussian parameter α 2 (t) reaches a maximum. The non-Gaussian parameter is Where r 4 (t) and r 2 (t) are the fourth and second moments of the displacement distribution, respectively. α 2 (t) is known to be zero for a Gaussian distribution [M.G. Mazza et al. Phys. Rev. E 76, (2007)]. ® 2 ( t ) = 3 h r 4 ( t )i 5 h r 2 ( t )i ¡ 1

t* is correlated with f (4) for values corresponding to the systems below 300K. It is observed that f(4) ~ (t*) -1/4. The increase of q is also correlated with the increase of the non-Gaussian behavior of water displacement.

The temporal correlation function of hydrogen bonds P(t), has a q-exponential behavior. q have values above 1, below a characteristic temperature. The increase of q is associated with the increase of the probability of two molecules remain bonded during a longer time t. The temperature (~300 K), at which the transition of q ~ 1 to q > 1 occurs, coincides with that at which the tetrahedral structure of water and the cage effect in the MSD begins to prevail. CONCLUSION

Angell C.A., Water: A Comprehensive Treatise, Plenum Press, New York, (1981). Angell C.A. and Rodgers V., “Near infrared spectra y the disrupted network model of normal y supercooled water”, J. Chem. Phys., 80, , (1984). Berendsen H.J.C., Grigera J.R., Straatsma T.P., “The missing term in effective pair potentials”, J. Phys.Chem., 91, , (1987). Berendsen H., Postma J., van Gusteren W., Di Nola A. and Haak J., “Molecular dynamics with coupling to an external bath”, J. Chem. Phys., 81, , (1984). Berendsen H.J.C., van der Spoel D. and Drunen R.V., “GROMACS: a message passing parallel molecular dynamics implementation”, Comp. Phys. Comm., 91, 43-56, (1995). Cruzan J.D., Braly L.B., Liu K., Brown M.G., Loeser J.G., and Saykally R.J., “Quantifying Hydrogen Bond Cooperativity in Water: VRT Spectroscopy of the Water Tetramer”, Science, 271, 59-62, (1996). Debenedetti P.G., Metastable Liquids, Princeton University Press, Princeton, (1996). Eisenberg D. and Kauzmann W., The Structure y Properties of Water, Oxford University Press, New York, (1969). Mallamace F., Broccio M., Corsaro C., Faraone A., Wandrlingh U., Liu L., Mou C., and Chen S.H., “The fragile-to-strong dynamics crossover transition in confined water: nuclear magnetic resonance results”, J. Chem. Phys., 124, , (2006). Mishima O. and Stanley H.E., “The Relationship between Liquid, Supercooled and Glassy Water”, Nature, 396, , (1998). Montrose C.J., Búcaro J.A., Marshall-Coakley J. and Litovitz T.A., “Depolarized Rayleigh scattering y hydrogen bonding in liquid water”, J. Chem. Phys., 60, , (1974). Luzar A. and Chandler D., “Hydrogen bond kinetics in liquid water”, Nature, 379, 55-57, (1996a). Luzar A. and Chandler D., “Effect of Environment on Hydrogen Bond Dynamicsin Liquid Water”, Phys. Rev. Lett., 76, , (1996b). Sciortino F. and Fornili S.L., “Hydrogen bond cooperativity in simulated water: Time dependence analysis of pair interactions”, J. Chem. Phys., 90, , (1989). Stillinger F.H., “Theory y molecular models for water”, Adv. Chem. Phys., 31, 1-102, (1975). Starr F.W., Nielsen J.K., and Stanley H.E., “Fast and slow dynamics of hydrogen bonds in liquid water”, Phys. Rev. Lett., 82, , (1999). Starr F.W., Nielsen J.K. and Stanley H.E., “Hydrogen-bond dynamics for the extended simple point-charge model of water”, Phys. Rev. E., 62, , (2000). Sutmann G., and Vallauri, R., “Dynamics of the hydrogen bond network in liquid water”, Journal of Molecular Liquids, 98–99, 213–224, (2002). Tsallis C., “Possible generalization of Boltzmann-Gibbs statistic”, Journal of Statistical Physics, 52, , (1988). Walpole R. and Myers R., Probabilidad y Estadística, 4ª Ed. McGraw Hill, México, (1992). Woutersen S., Emmerichs U. and Bakker H., “Femtosecond Mid-Infrared Pump-Probe Spectroscopy of Liquid Water: Evidence for a Two-Component Structure”, Science, 278, 658, (1997). References

Thank you ! q-exponential distribution in time correlation function of water hydrogen bonds Campo, Mario G., Ferri, Gustavo L., Roston Graciela B. Departamento de Física. Facultad de Ciencias Exactas y Naturales de la UNLPam. Uruguay 151. Santa Rosa (L.P.) Argentina.