DCM demo André Bastos and Martin Dietz Wellcome Trust Centre for Neuroimaging.

Slides:



Advertisements
Similar presentations
Dynamic Causal Modelling (DCM) for fMRI
Advertisements

Bayesian inference Lee Harrison York Neuroimaging Centre 01 / 05 / 2009.
EEG-MEG source reconstruction
Wellcome Dept. of Imaging Neuroscience University College London
Dynamic causal Modelling for evoked responses Stefan Kiebel Wellcome Trust Centre for Neuroimaging UCL.
EEG/MEG Source Localisation
Dynamic Causal Modelling for ERP/ERFs
DCM for ERP/ERF A presentation for Methods for Dummies By Ashwini Oswal and Elizabeth Mallia.
DCM for evoked responses Harriet Brown SPM for M/EEG course, 2013.
Bayesian models for fMRI data
Dynamic Causal Modelling for ERP/ERFs Valentina Doria Georg Kaegi Methods for Dummies 19/03/2008.
Early auditory novelty processing in humans: auditory brainstem and middle-latency responses Slabu L, Grimm S, Costa-Faidella J, Escera C.
What do you need to know about DCM for ERPs/ERFs to be able to use it?
Overview Contrast in fMRI v contrast in MEG 2D interpolation 1 st level 2 nd level Which buttons? Other clever things with SPM for MEG Things to bear in.
Computational and physiological models Part 2 Daniel Renz Computational Psychiatry Seminar: Computational Neuropharmacology 14 March, 2014.
J. Daunizeau Motivation, Brain and Behaviour group, ICM, Paris, France Wellcome Trust Centre for Neuroimaging, London, UK Dynamic Causal Modelling for.
Dynamic Causal Modelling THEORY SPM Course FIL, London October 2009 Hanneke den Ouden Donders Centre for Cognitive Neuroimaging Radboud University.
Rosalyn Moran Virginia Tech Carilion Research Institute Dynamic Causal Modelling for Cross Spectral Densities.
Abstract We start with a statistical formulation of Helmholtz’s ideas about neural energy to furnish a model of perceptual inference and learning that.
Max Planck Institute for Human Cognitive and Brain Sciences Leipzig, Germany A hierarchy of time-scales and the brain Stefan Kiebel.
DCM for ERPs/EFPs Clare Palmer & Elina Jacobs Expert: Dimitris Pinotsis.
EEG/MEG Source Localisation SPM Course – Wellcome Trust Centre for Neuroimaging – Oct ? ? Jérémie Mattout, Christophe Phillips Jean Daunizeau Guillaume.
J. Daunizeau Wellcome Trust Centre for Neuroimaging, London, UK UZH – Foundations of Human Social Behaviour, Zurich, Switzerland Dynamic Causal Modelling:
Dynamic Causal Modelling of Evoked Responses in EEG/MEG Wellcome Dept. of Imaging Neuroscience University College London Stefan Kiebel.
Dynamic causal modelling of electromagnetic responses Karl Friston - Wellcome Trust Centre for Neuroimaging, Institute of Neurology, UCL In recent years,
J. Daunizeau ICM, Paris, France ETH, Zurich, Switzerland Dynamic Causal Modelling of fMRI timeseries.
Input Single-state DCM Intrinsic (within- region) coupling Extrinsic (between- region) coupling Multi-state DCM with excitatory and inhibitory connections.
Abstract This talk summarizes our recent attempts to integrate action and perception within a single optimization framework. We start with a statistical.
Abstract This talk will present a general approach (DCM) to the identification of dynamic input-state-output systems such as the network of equivalent.
Dynamic Causal Modelling for EEG and MEG
Deans Lecture Reception PM, Lecture 6-7, Lecture theatre S1, Clayton Campus, Monash University). Models, maps and modalities in brain imaging Karl.
Abstract This tutorial is about the inversion of dynamic input-state-output systems. Identification of the systems parameters proceeds in a Bayesian framework.
Dynamic Causal Modelling (DCM) Marta I. Garrido Thanks to: Karl J. Friston, Klaas E. Stephan, Andre C. Marreiros, Stefan J. Kiebel,
Dynamic Causal Modelling Introduction SPM Course (fMRI), October 2015 Peter Zeidman Wellcome Trust Centre for Neuroimaging University College London.
Ch. 5 Bayesian Treatment of Neuroimaging Data Will Penny and Karl Friston Ch. 5 Bayesian Treatment of Neuroimaging Data Will Penny and Karl Friston 18.
Bayesian Model Comparison Will Penny London-Marseille Joint Meeting, Institut de Neurosciences Cognitive de la Mediterranee, Marseille, September 28-29,
Bernadette van Wijk DCM for Time-Frequency 1. DCM for Induced Responses 2. DCM for Phase Coupling.
Dynamic Causal Model for evoked responses in MEG/EEG Rosalyn Moran.
Bayesian inference Lee Harrison York Neuroimaging Centre 23 / 10 / 2009.
MEG Analysis in SPM Rik Henson (MRC CBU, Cambridge) Jeremie Mattout, Christophe Phillips, Stefan Kiebel, Olivier David, Vladimir Litvak,... & Karl Friston.
DCM for evoked responses Ryszard Auksztulewicz SPM for M/EEG course, 2015.
Principles of Dynamic Causal Modelling (DCM) Bernadette van Wijk Charité-University Medicine Berlin SPM course for MEG & EEG 2016.
DCM for ERP/ERF: theory and practice Melanie Boly Based on slides from Chris Phillips, Klaas Stephan and Stefan Kiebel.
Dynamic Causal Modelling for event-related responses
Principles of Dynamic Causal Modelling
Dynamic Causal Modeling of Endogenous Fluctuations
DCM for ERP/ERF: theory and practice
Dynamic Phase Coupling
Effective Connectivity
M/EEG Analysis in SPM Rik Henson (MRC CBU, Cambridge)
M/EEG Statistical Analysis & Source Localization
DCM for Time Frequency Will Penny
Wellcome Trust Centre for Neuroimaging University College London
Dynamic Causal Model for evoked responses in M/EEG Rosalyn Moran.
Dynamic Causal Model for Steady State Responses
Dynamic Causal Modelling for ERP/ERFs
Brain Connectivity and Model Comparison
DCM for evoked responses
Dynamic Causal Modelling for M/EEG
Dynamic Causal Modelling
CRIS Workshop: Computational Neuroscience and Bayesian Modelling
Weakly Coupled Oscillators
Effective Connectivity
M/EEG Statistical Analysis & Source Localization
Statistical Parametric Mapping
Wellcome Trust Centre for Neuroimaging, University College London, UK
Dynamic Causal Modelling for evoked responses
Weakly Coupled Oscillators
DCM Demo – Model Specification, Inversion and 2nd Level Inference
Presentation transcript:

DCM demo André Bastos and Martin Dietz Wellcome Trust Centre for Neuroimaging

pseudo-random auditory sequence 80% standard tones – 500 Hz 20% deviant tones – 550 Hz time standardsdeviants Mismatch negativity (MMN) paradigm and hypothesis time (ms) Paradigm: amplitude (μV) Deviant ERP Standard ERP Hypothesis: MMN is caused by recurrent dynamics enabled by backward connections Garrido et al., Neuroimage 2007

Mismatch Negativity scalp topography of ERPs time (ms) sensors standard deviant Deviant ERP Standard ERP time (ms) amplitude (μV) Hypothesis: MMN is caused by recurrent dynamics enabled by backward connections

The generative model Source dynamics f states x parameters θ Input u Evoked response data y Observation model g David et al., Neuroimage 2006; Kiebel et al., Neuroimage 2006

DCM specification A1 STG input STG IFG several plausible models… modulation of effective connectivity Forward - F Backward - B Both - FB Garrido et al., Neuroimage 2007 Opitz et al., 2002 lSTG rSTG rIFG Deviant response Standard response time (ms) amplitude (μV) What set of areas and interconnections caused the MMN?

A1 STG Forward Backward Lateral STG input A1 STG Forward Backward Lateral input A1 STG Forward Backward Lateral input Forward-FBackward-B Forward and Backward-FB STG IFG DCM specification of different models modulation of effective connectivity Garrido et al., Neuroimage 2007

Analysis steps 0. Have a HYPOTHESIS! 1.Preprocessing and SVD decomposition 2.Model specification: specify cortical areas and inter- areal connections for various competing models that you think might explain your data 3.Model inversion: find the parameters that minimize differences between observed measurements and model predictions for each of the competing models 4.Bayesian model comparison: make a statistical inferences about which model best describes the data