Yun Hee Jang, Mario Blanco, William A. Goddard, III MSC, Beckman Institute, Caltech Augustin J. Colussi, Michael R. Hoffmann Department of Chemistry and.

Slides:



Advertisements
Similar presentations
Changes in Matter Chapter 3 sections 1 and 3. Solid Definite Shape and Definite Volume.
Advertisements

Towards More Realistic Molecular Modeling of Homogenous Catalysis: Combined QM/MM and ab initio Molecular Dynamics Investigations Tom K. Woo, Peter M.
SCCDFTB as a bridge between MM and high-level QM. Jan Hermans University of North Carolina 1.
Molecular Modeling of Structure and Dynamics in Fuel Cell Membranes A. Roudgar, Sudha N.P. and M.H. Eikerling Department of Chemistry, Simon Fraser University,
Molecular Dynamics at Constant Temperature and Pressure Section 6.7 in M.M.
Chapter 16 Section 1 Kinetic Theory.
Hot Under the Collar (part II) Crystallisation Fluorite Igneous petrology is all about crystals and how they get there.
Chemistry 6440 / 7440 Molecular Mechanics. Resources Grant and Richards, Chapter 3 Leach, Chapter 3 Jensen, Chapter 2 Cramer, Chapter 2 Burkert and Allinger,
1 Gas Hydrate basics. 2 Gas Hydrates Ice-like, crystalline solid May exist at temperatures up to 25 ° C at high pressure ‘Practical discovery’ by Hammerschmidt,
AMBER Parameters for Pseudouridine Delon Wilson Advisor: J. SantaLucia.
SMA5233 Particle Methods and Molecular Dynamics Lecture 3: Force Fields A/P Chen Yu Zong Tel:
Energy and Phases. Potential Energy - stored energy (stored in bonds, height) Kinetic Energy - energy of motion, associated with heat.
Ab initio Calculations of Interfacial Structure and Dynamics in Fuel Cell Membranes Ata Roudgar, Sudha P. Narasimachary and Michael Eikerling Department.
1 A Combined Density Functional Theory and Molecular Mechanics Study of Iron(II)- and Cobalt(II)- Based Catalysts for the Polymerization of Ethylene Liqun.
Molecular Modeling of Crystal Structures molecules surfaces crystals.
Biochemistry Atoms, Elements, and Compounds Chemical Reactions
Fat Crystallization April 14, 2015.
Chemistry in Extreme Environments Chris Bennett, Xibin Gu, Brant Jones, Pavlo Maksyutenko, Fangtong Zhang, Ralf I. Kaiser Department of Chemistry, University.
2.13 Sources of Alkanes and Cycloalkanes. Crude oil.
Clathrates, Clusters and Crystals P.M. Rodger Department of Chemsitry.
Yun Hee Jang, Mario Blanco, Siddharth Dasgupta, William A. Goddard, III MSC, Beckman Institute, Caltech David A. Keire, John E. Shively The Beckman Research.
1 F ORCE F IELD O PTIMIZATION for F LUOROCARBON Seung Soon Jang.
Principles of Liquid Flow through Pipelines
A Monte Carlo discrete sum (MCDS) approach to energies of formation for small methanol clusters Srivatsan Raman*, Barbara Hale and Gerald Wilemski Physics.
MSC99 Research Conference 1 Coarse Grained Methods for Simulation of Percec and Frechet Dendrimers Georgios Zamanakos, Nagarajan Vaidehi, Dan Mainz, Guofeng.
Properties of Matter Chapter Four: Density and Buoyancy Chapter Five: States of Matter.
Water cluster- silica collision Water cluster, 104 H 2 O Simulation time, 17ps NVE simulations O 1560 Si atoms Molecular mass g/mole.
Computational Solid State Chemistry Group Steve Parker Dept of Chemistry University of Bath.
Molecular Modeling Part I Molecular Mechanics and Conformational Analysis ORG I Lab William Kelly.
Computer-Assisted Drug Design (1) i)Random Screening ii)Lead Development and Optimization using Multivariate Statistical Analyses. iii)Lead Generation.
Optimization of Carbocyclic Analogues to a Specific Pharmaceutical Enzyme Target via Discovery Studio TM Douglas Harris Department of Chemistry and Biochemistry,
Property Scaling Relations for Nonpolar Hydrocarbons Sai R. Panuganti 1, Francisco M. Vargas 1, 2, Walter G. Chapman 1 1 Chemical and Biomolecular Engineering.
Electrostatic Effects in Organic Chemistry A guest lecture given in CHM 425 by Jack B. Levy March, 2003 University of North Carolina at Wilmington (subsequently.
1 Headache or Energy Source of the Future? Murray Gray Department of Chemical and Materials Engineering University of Alberta.
Chapter ISSUES TO ADDRESS... What are the general _____________________ characteristics of polymer molecules? What are some of the ____________________.
Energy and Phases.  Potential Energy - stored energy (stored in bonds, height)  Kinetic Energy - energy of motion, associated with heat.
Understanding Molecular Simulations Introduction
2.13 Sources of Alkanes and Cycloalkanes. Crude oil.
Meta-stable Sites in Amorphous Carbon Generated by Rapid Quenching of Liquid Diamond Seung-Hyeob Lee, Seung-Cheol Lee, Kwang-Ryeol Lee, Kyu-Hwan Lee, and.
Ligand configurational entropy and protein binding Chia-en A. Chang, Wei Chen, and Michael K. Gilson – PNAS(2007) Presented by Christopher Williams.
1 Thermal conductivity of carbon dioxide from non-equilibrium molecular dynamics Thuat T. Trinh Thuat.T. Trinh, 1 T. J. H. Vlugt, 2 S. Kjelstrup 1 1 Department.
Molecular dynamics (4) Treatment of long-range interactions Computing properties from simulation results.
Contact line dynamics of a liquid meniscus advancing into a microchannel with chemical heterogeneities C. Wylock 1, M. Pradas 2, B. Haut 1, P. Colinet.
Biofuels Spring Turning Chemical Energy into Mechanical Work C 8 H 18 (l) + 25/2 O 2 (g)  8 CO 2 (g) + 9 H 2 O(g) + energy.
Surface energy study γS : surface free energy of solid
Liquids and Solids. Relative Magnitudes of Forces The types of bonding forces vary in their strength as measured by average bond energy. Covalent bonds.
Matter Chapter Five 5.2 Solid Matter 5.2 Mechanical properties “Strength” describes the ability of a solid object to maintain its shape even when force.
A New Potential Energy Surface for N 2 O-He, and PIMC Simulations Probing Infrared Spectra and Superfluidity How precise need the PES and simulations be?
Aggregation-induced enhanced emission (AIEE) Myounghee Lee
Molecular Modeling: Molecular Mechanics C372 Introduction to Cheminformatics II Kelsey Forsythe.
Presented by: Dr. Bader Albusairi Work Done by: Dr. Bader Albusairi Eng. Reem Alkhaldey Chemical Engineering Department College of Engineering and Petroleum.
Crude oil.
Atoms and molecules form solids by building repeating patterns.
Polymers: what they are and how they work?
Sanghamitra Mukhopadhyay Peter. V. Sushko and Alexander L. Shluger
CHAPTER 4: Structures of Polymers
HYDROCARBON NOTES.
Alkanes.
Chapter 14: Polymer Structures
Crystallization of n-alkanes in equilibrium and under shear
Atomistic simulations of contact physics Alejandro Strachan Materials Engineering PRISM, Fall 2007.
CHAPTER 14: Structures of Polymers
Chemical Compounds in Cells
An All-Atom Molecular Dynamics Study
By: Mrs. “the long weekend was wonderful” Burge
Ching-Hsing Yu, Samuel Cukierman, Régis Pomès  Biophysical Journal 
Hot Cold Molecules: Collisions at Astrophysical Temperatures
Properties of Matter Chapter Four: Density and Buoyancy
Understanding Wax Formation From a Molecular Perspective Angelo Lucia, Department of Chemical Engineering, University of Rhode, Kingston, RI
Presentation transcript:

Yun Hee Jang, Mario Blanco, William A. Goddard, III MSC, Beckman Institute, Caltech Augustin J. Colussi, Michael R. Hoffmann Department of Chemistry and Chemical Engineering, Caltech Yongchun Tang, Bob Carlson, Huey-jyh Chen, Jefferson Creek Chevron Petroleum Technology Co.

hot oil cold sea water wax oil production pipe wall Wax: Aggregates of heavy n-alkanes at low temperature  pipe blocking cold sea water Comb-like wax inhibitor Wax inhibitor (comb-like polymer): No established mechanism of action. cold sea water cold sea water

Wax Inhibition Wax Formation Liquid  Amorphous solid  Ordered crystal  Further growth  Adsorption on pipe (1) Sequestering mechanism long alkanes in oil selectively partition toward the inhibitors making them less available to nucleate a wax crystal (2) Incorporation-perturbation mechanism inhibitors partition from the oil into amorphous wax ("soft wax") slowing down the crystallization of soft wax to form "hard wax” (3) Wax crystal adsorption mechanism adsorption of inhibitors on initial wax nuclei or growing wax crystals inhibits further wax growth (4) Pipeline adsorption mechanism adsorption of inhibitors on the pipe wall provides an irregular surface that interferes with adsorption of wax to form crystals Objective of this work: Establish mechanism by investigating each of them

Hydrocarbons and long alkyl sidechains United atom model (SKS) (Siepmann, Karaborni and Smit, Nature, 365, 330 (1993)) Stretching from AMBER with r 0 =1.54 Å from SKS Acrylate backbones (around -COO-) VdW: OPLS (Briggs, Nguyen and Jorgensen, J. Phys. Chem. 95, 315 (1991)) Charge: HF/6-31G** calculation Torsion: fitted to HF/6-31G** torsion energy curve for model systems Stretching/bending/inversion: AMBER (r 0,  0 from OPLS) Styrene backbones (around phenyl ring) DREIDING (Mayo, Olafson and Goddard, J. Phys. Chem. 94, 8897 (1990)) Torsion: checked to reproduce ab initio torsion potential for model system (G. Gao)

PAA1 (C 18 ) good PAA2 (C 18 /C 1 ) good PAA3 (C 22 ) poor PAS2 (C 18 /C 1 ) very poor The same side chain distribution The same MW

n-heptane (n-C 7 ) (m.p.183 K; b.p. 372 K) n-C 31 or n-C 32 (amorphous; m.p.~340 K) n-dotriacontane (n-C 32 ) (crystalline) Calc. Average from ps NPT dynamics error from std. dev. of block averages Expt’l J. Chem. Eng. Data 9, 231 (1994) CRC handbook of chemistry and physics

MD simulations started at various positions of n-C 32 w.r.t. PAA1 in n-C 7 bath Unsequestered wax at 293 K = -741  5* kcal/mol ( ps) Sequestered wax at 293 K = -739  12* kcal/mol (100~200 ps) long alkanes in oil selectively partition toward the inhibitors making them less available to nucleate a wax crystal *Error estimated by the standard deviation between four 25-ps block average No energy gain after sequestering Close contact

 E << 0  CED =  17%  CED =  318% Very favorable + Additive Incorporation Crystallization 1 1. Amorphous pure n-C Amorphous n-C 32 with additive 4. Crystalline pure n-C Crystalline n-C 32 with additive  E << 0  CED = 55%  Additive Segregation  CED = +80% Less favorable than above Crystallization 2 (1  2  3  4) is slower than (1  4). (Crystallization is delayed with additive.)

(E 1 ) beforeafter E(incorporation) = E after  E before = (E 3 +E 4 )  (E 1 +E 2 ) = (E 4  E 2 )  (E 1  E 3 ) = E int (C 31 )  E int (C 7 ) PAA1 in n-C 7 (E 2 ) pure n-C 31 (E 3 ) pure n-C 7 (E 4 ) PAA1 in n-C 31

*Interaction energy between inhibitor with oil/wax *averaged over 200~600 ps of MD simulations *normalized by average contact area *error estimated from duplicate runs for each system No correlation or reverse correlation to expectation

Incorporated inhibitors disturb conformation relaxation of wax for crystallization? No *average over 55 n-C31’s of standard deviation of end-to-end distance along time ps MD Counted each 1ps

Preliminary study: adsorption of inhibitor on  -Fe 2 O 3, a model of pipewall based on the difference in efficiency between hydrophilic PAA and hydrophobic PAS based on the efficiency increase when inhibitor is added initially From 40~120 ps MD at solid(fix)-vacuum interface  -Fe 2 O 3 force field S. Jiang, et al. J. Phys. Chem. 100, (1996)

Sequestering mechanism? No. No energy difference between sequestered and unsequestered state There is no preference for wax molecules to be sequestered by inhibitor. Incorporation-Perturbation mechanism? No. It cannot explain the difference in efficiency between PAA and PAS. Adsorption of inhibitor on hydrophilic surface (e.g.  -Fe 2 O 3 ) It looks good so far, but it needs more work. Larry Smarr (U. Illinois) for supercomputer allocation at NCSA Yanhua Zhou for  Fe 2 O 3 structure and force field