Documentation and example Richard Senecal, Senior Principal Programmer NJ CDISC Users Group Merck/Summit, September 19, 2013 define.xml.v2 row-level metadata.

Slides:



Advertisements
Similar presentations
Experience and process for collaborating with an outsource company to create the define file. Ganesh Sankaran TAKE Solutions.
Advertisements

Copyright © 2012 Quintiles Define.XML A CASE study describing how to produce Define.XML from within SAS Dianne Weatherall Sep 2012.
COMPUTER TECHNOLOGY WORD REVIEW. Block Letter Center vertically or 2” top margin Do NOT tab. SS within a section. DS between sections except for after.
Quick tour of CDISC’s ADaM standard
Kendle Implementation of Clinical Data Acquisition Standards Harmonization Dr Elke Sennewald Kendle 9th German CDISC User Group Meeting Berlin, 28 September.
Cross Check between Define.xml and blankcrf.pdf
Gregory Steffens Associate Director, Programming Novartis Row – Level Metadata.
Modules, Hierarchy Charts, and Documentation
Metadata Management – Our Journey Thus Far
Gregory Steffens Novartis Associate Director, Programming NJ CDISC Users’ Group 17 April 2014 Supplemental Qualifiers.
Report Writing Format.
7. German CDISC User Group Meeting Define.xml Generator ODM Validator (define.xml validation) 2010/03/11 Dimitri Kutsenko Marianne Neumann.
A Basic Approach.  No filing strategy: You create no folders, keeping all s in the inbox.  Filing system: You use a simple filing scheme based.
Copyright © 2010, SAS Institute Inc. All rights reserved. Define.xml - Tips and Techniques for Creating CRT - DDS Julie Maddox Mark Lambrecht SAS Institute.
Introduction to the CDISC Website John Brega, PharmaStat LLC Bay Area CDISC Implementation Network 2 April 2009.
Monika Kawohl Statistical Programming Accovion GmbH Tutorial: define.xml.
Diastolic Blood Pressure C25299 C25299 CDISC VSTESTCD = “DIABP” Blood Pressure C54706 The pressure of the circulating blood against the walls of the blood.
PhUSE SDE, 28-May A SAS based Solution for define.xml Monika Kawohl Statistical Programming Accovion.
ODM-SDTM mapping Nicolas de Saint Jorre, XClinical June 20, 2008 French CDISC User Group Bagneux/Paris © CDISC & XClinical, 2008.
CDASh : A Primer and Guide to Implementation
Confidential - Property of Navitas Accelerate define.xml using defineReady - Saravanan June 17, 2015.
CDISC XML Technologies Standards Development An Update Sam Hume
© Copyright 2008 ADaM Validation and Integrity Checks Wednesday 12 th October 2011 Louise Cross ICON Clinical Research, Marlow, UK.
SDTM Validation Delaware Valley CDISC user network Ketan Durve Johnson and Johnson Pharmaceutical Reasearch and Development May 11 th 2009.
Translations Translations and Getting Ready for Reflections by Graphing Horizontal and Vertical Lines.
Creating Feeds for News, Events, and More Vinit Varghese Implementation Manager.
RCRIM Projects: Protocol Representation and CDISC Message(s) January 2007.
Database Essentials. Key Terms Big Data Describes a dataset that cannot be stored or processed using traditional database software. Examples: Google search.
CDASH – SDTM Mapping Kurt Hellstern
Recursive Functions Creating Hierarchical Reports Date: 9/30/2008 Dan McCreary President Dan McCreary & Associates (952) M.
Overview of CDISC standards and use cases along the E2E data management process Dr. Philippe Verplancke ESUG Marlow, UK 27 May 2009.
Lotus 认证培训 Notes Domino 6/6.5 Application Development Foundation Skills ( 610 ) Exam Number: 610 Competencies: Please see exam guide. Length:
1 Loading of Central Lab Data in CDISC LAB Standard Kurt Hellstern Hands-on GmbH.
1 © Assero Limited, 2015 CDISC Standards and the Semantic Web Dave Iberson-Hurst 12 th October 2015 PhUSE Annual Conference, Vienna.
Research Study Data Standards Standards for research study data for submission to regulatory authorities Standard development divided into three parts:
Versioning and Use Case Demonstration Pavel Stoev Senior Solutions Developer Links Technology Solutions.
April ADaM define.xml - Metadata Design Analysis Results Metadata List of key analyses (as defined in change order) Analysis Results Metadata per.
CDISC ODM OPEN Development Conference September 17-19, 2008 Phoebe Whitefield Senior Systems Analyst.
How Good is Your SDTM Data? Perspectives from JumpStart Mary Doi, M.D., M.S. Office of Computational Science Office of Translational Sciences Center for.
Mark Wheeldon, Formedix CDISC UK Network June 7, 2016 PRACTICAL IMPLEMENTATION OF DEFINE.XML.
Most Common Issues in Define.xml files
The use of LOINC in CDISC Standards German CDISC Users Meeting Stuttgart Jozef Aerts XML4Pharma.
CDISC submission standard
A need for prescriptive define.xml
Prof. Dr. Faisel Ghazi Mohammed
Value Value Meaning Value Meaning Concept Codes
Monika Kawohl Statistical Programming Accovion GmbH
Practical Implementation of Define.xml
Experience and process for collaborating with an outsource company to create the define file. Ganesh Sankaran TAKE Solutions.
The use of LOINC in CDISC Standards
Accelerate define.xml using defineReady - Saravanan June 17, 2015.
Second Annual Japan CDISC Group (JCG) Meeting
Metadata Curator's Assessments on CDISC CT Mappings
SDTM Work Stream Basel, September 2, 2008.
Monika Kawohl Statistical Programming Accovion GmbH
Some ways to encourage quality programming
Microsoft Office WORD - TABLES.
CDISC UK Network Jun-16 – Welwyn
A SAS macro to check SDTM domains against controlled terminology
To change this title, go to Notes Master
define.xml.v2 row-level metadata
Loading of Central Lab Data
Demystifying Define.xml Codelists for Nonclinical Studies
This presentation document has been prepared by Vault Intelligence Limited (“Vault") and is intended for off line demonstration, presentation and educational.
aCRF Design Manual German CDISC User Group Markus Stoll
Monika Kawohl Statistical Programming Accovion GmbH
This presentation document has been prepared by Vault Intelligence Limited (“Vault") and is intended for off line demonstration, presentation and educational.
SDTM Work Stream Basel, September 2, 2008.
Analysis Data Model (ADaM)
PhilaSUG Spring Meeting June 05, 2019
Presentation transcript:

documentation and example Richard Senecal, Senior Principal Programmer NJ CDISC Users Group Merck/Summit, September 19, 2013 define.xml.v2 row-level metadata

CDISC Define-XML Specification Version 2.0 | Presentation Title | Presenter Name | Date | Subject | Business Use Only2 Value Level Metadata sections

what is the context? | Presentation Title | Presenter Name | Date | Subject | Business Use Only3 converting vertical files to horizontal USUBJIDVSTESTCDVSORRESVSORRESU 1HEIGHT78inches 1DIABP80mmHg 1FRMSIZEMEDIUM USUBJIDHEIGHTHEIGHTUDIABPDIABPUFRMSIZE 178inches80mmHgMEDIUM vertical file horizontal file

where does it live in define.xml? | Presentation Title | Presenter Name | Date | Subject | Business Use Only4 page 12

Codelists for VSTEST and VSTESTCD | Presentation Title | Presenter Name | Date | Subject | Business Use Only5 page 29 and IE DEMO vs.vstest and vs.vstestcd  The VSTEST CodeList uses EnumeratedItems to store the list of possible values, as listed in the NCI/CDISC SDTM Controlled Terminology documents.  The VSTESTCD CodeList uses CodeListItems to reflect the association with VSTEST items.

define version 1 vs version 2 | Presentation Title | Presenter Name | Date | Subject | Business Use Only6 page 34  define.v1 attached valuelist to –TESTCD and was assumed to describe the –ORRES only  define.v2 attaches valuelist to any variable: --orres --orresu --stresc --stresn --stresu

How the sections are chained together | Presentation Title | Presenter Name | Date | Subject | Business Use Only7 pages  ItemGroupDef has ItemRef for variables like VSORRES  ItemDef for VSORRES has a def:ValueListRef pointing to a def:ValueListDef  def:ValueListDef has ItemRefs for values of VSORRES (like DIABP) in each ItemRef, there’s a def:WhereClauseRef  def:WhereClauseDef has logic like: if VSTESTCD eq “DIABP”

How the sections are chained together (cont...) | Presentation Title | Presenter Name | Date | Subject | Business Use Only8 pages  ItemDef for the DIABP value in VSORRES DataType="integer“ Length="2“ SASFieldName="DIABPOR“ Description=Diastolic Blood Pressure (Orig U) def:Origin Type="CRF“ def:PDFPageRef PageRefs="11“...

9 Thank You !