1 Rate Analysis of Oxygen Dissociation from Native and Oxy-Cobalt Myoglobin Advanced Inorganic Chemistry, Johns Hopkins University 3003 North Charles Street,

Slides:



Advertisements
Similar presentations
EDTA Titrations. Chelation in Biochemistry Chelating ligands can form complex ions with metals through multiple ligands. This is important in many areas,
Advertisements

Ligands and reversible binding. Ligands Kinetic experiments study the rate at which reactions happen.- how conc of reactant and product change as funct.
Oxygen Binding Proteins
Chemical Biology 03 BLOOD Biomolecular Structure Myoglobin and Hemoglobin 9/28-30/09
Meat Color ANSC Meat Color Meat color is very important because it affects consumer purchase decisions Research continues to find ways to improve.
Lect. 8-1 Globular Proteins Some design principles Globular proteins fold so as to "bury" the hydrophobic side chains, minimizing their contact with water.
Pulping and Bleaching PSE 476
Spectrophotometers and Concentration Assays
Overview energy is required for all cellular work most organisms produce ATP by using energy stored in the bonds of organic molecules such as carbohydrates.
Biochemistry 2/e - Garrett & Grisham Copyright © 1999 by Harcourt Brace & Company.
Bioinorganic Chemistry
Protein Function Monique Stage Competency Office.com.
Energy and Respiration Larry Scheffler Lincoln High School
CHEM 7784 Biochemistry Professor Bensley
Protein Function Hemoglobin as a model systems for: Ligand binding Quaternary structure and symmetry Cooperative behavior Allosteric conformational effects.
Energy and Respiration
1 Iron(III) Complex of a Crown Ether- Porphyrin Conjugate and Reversible Binding of Superoxide to Its Iron(II) Form Katharina Dürr, Brendan P. Macpherson,
Experiment 6 Amount of Dye in a Sports Drink. Goal To make a Beer’s Law standard curve To use the standard curve (and spectrophotometry) to determine.
Blood Oxygen physically diffused by 0.2ml / 100 ml blood By Hb 20ml / 100ml blood So it’s the main function.
Strength of Acids and Bases. What makes a strong acid or base?  The strength of an acid or base is based on how many acid or base particles break down.
C h a p t e rC h a p t e r C h a p t e rC h a p t e r 4 4 Reactions in Aqueous Solution Chemistry, 5 th Edition McMurry/Fay Chemistry, 5 th Edition McMurry/Fay.
1 Chapter 19Coordination Complexes 19.1The Formation of Coordination Complexes 19.2Structures of Coordination Complexes 19.3Crystal-Field Theory and Magnetic.
Lecture 2b. Electromagnetic Spectrum Visible range: = nm Ultraviolet: = nm Low energyHigh energy.
Determination of Iron in Water
Chapter Four: Stoichiometry “ Stoichiometry is a branch of chemistry that deals with the quantitative relationships that exist between the reactants and.
Properties of Solutions Solvent This is the liquid that is doing the dissolving Solute This is what is being dissolved Form a homogenous mixture.
Types of Chemical Reactions and Solution Stoichiometry.
Buffers of Biological & Clinical Significance Lecture 4 Lecturer: Amal Abu Mostafa Lecture 4 Lecturer: Amal Abu Mostafa 1 Clinical Analytical Chemistry.
Bio 98 - Lecture 7 Oxygen Binding Proteins
Topic B – Part 9 Respiration IB Chemistry Topic B – Biochem.
CHAPTER 25 Lesson 2 Strengths of Acids and Bases.
CHAPTER 12 ELECTRODE POTENTIALS AND THEIR APPLICATIONS TO XIDATION/REDUCTION TITRATIONS Introduction to Analytical Chemistry.
The Kinetic Study of Oxidation Reactions of (TDFPP)FeIVO, Model Compound of Heme Iron Center in Cytochrome P450 Se Ryeon Lee Department of Chemistry Johns.
Koji KANO and Hiroaki KITAGISHI (Doshisha University, Kyoto, Japan) Cyclodextrin Dimers as Simple Myoglobin Models in Aqueous Solution.
L INK BETWEEN THE STRUCTURE & FUNCTION OF HAEMOGLOBIN, MYOGLOBIN, LEUCOCYTES AND PLATELETS.
Hemoglobin, an AllostericProtein. Hemoglobin vs Myoglobin Hemoglobin (Hb): - found in red blood cells - responsible for transport of O 2 from lungs to.
Chapter 3 Water and the Fitness of the Environment.
CHEMISTRY ANALYTICAL CHEMISTRY Fall Lecture 14.
Happy Wednesday 9/2/15 Hand in Mealworm lab Chemistry Quiz
Spectrophotometers and Concentration Assays
Copyright © 2005 Pearson Education, Inc. publishing as Benjamin Cummings Water and the Fitness of the Environment Figure 3.1.
Water and Aqueous Systems Chapter 17. Objectives 1.Describe the hydrogen bonding that occurs in water 2.Explain the high surface tension and low vapor.
7 7-1 © 2003 Thomson Learning, Inc. All rights reserved Bettelheim, Brown, and March General, Organic, and Biochemistry, 7e.
Introduction Our work is aimed at making hybrid myoglobins to use in photochemical studies of catalysis by heme proteins. Although myoglobin does not.
Suggested HW Ch. 5 1 – 9 (Chapter 5.1, 5.2)
1 Oscillation Lab Discussion. 2 BrO Br H +1 → 3 Br H 2 O then:BrO Br H +1 → 3 Br H 2 O then: Br 2 + CH 2 (CO 2.
Stereocenter. stereocenter Enzyme kinetic assay How fast does the reaction occur? How good of a catalyst is fumarase? Rate enhancement? What factors.
Globular proteins Myoglobin and hemoglobin
Acids, Bases and pH Water molecules dissociate Dissociates into OH- and H+ Water is neutral because there are equal numbers of OH- and H+
Spectrophotometers and Concentration Assays Chapter 7.
1. Hemoglobin & Myoglobin 2 Glossary of terms A molecule bound reversibly by a protein is called a ligand A ligand binds at a site on the protein called.
Basic Chemistry Interactions between atoms—chemical bonds –Chemical reaction Interaction between two or more atoms that occurs as a result of activity.
Myoglobin and Hemoglobin
Globular proteins Myoglobin and hemoglobin
Dr. Pandit Khakre Asst. Prof Mrs. K.S.K. College, Beed.
Chemical Reactions & Enzymes
Introduction to Solutions
Hemoglobin and Myoglobin
Heme-Artemisinin Adducts Are Crucial Mediators of the Ability of Artemisinin to Inhibit Heme Polymerization  R Kannan, Dinkar Sahal, V.S Chauhan  Chemistry.
Acids, Bases, and the pH scale
Coordination Chemistry
The Importance of Metal Aqueous Speciation
Exp. Iron in Vitamin Tablet
Chapter 7 Reaction Rates and Chemical Equilibrium
Hemoglobin and Myoglobin
NikR Repressor Chemistry & Biology
Properties and synthetic methods concerning Co(II) derivatives and CO2 activation Angelique Amado l Feifei Li, Chao Dong l Department of Chemistry.
at the University of Alabama
Wei Zhang, John S. Olson, George N. Phillips  Biophysical Journal 
Titanium Dioxide Sensitized with Porphyrin Dye as a Photocatalyst for the Degradation of Water Pollutants Kevin Reyes, A.S. & Ivana Jovanovic, Ph.D. Department.
Presentation transcript:

1 Rate Analysis of Oxygen Dissociation from Native and Oxy-Cobalt Myoglobin Advanced Inorganic Chemistry, Johns Hopkins University 3003 North Charles Street, Baltimore, MD Jamal N. Shillingford

2 Myoglobin is a globular protein responsible for reversible binding and transport of oxygen through the muscles of the body by use of an iron containing heme cofactor. The cobalt(II) analog of myoglobin can also reversibly bind molecular oxygen, forming 1:1 adducts with this ligand. Studies have shown that oxygen binding occurs at a comparable rate to that of the iron species, but there is a significant difference between their rates of oxygen dissociation. In this study, I explore the disparity in the rates of oxygen dissociation of the two complexes in their conversion from the oxygenated to the deoxygenated forms. There is expected to be a faster rate of dissociation for the cobalt analog due to weaker binding of the oxygen to the metal center. Abstract H Co(III)Mb-O 2 Co(II)Mb + O 2 k on k off Fe(III)Mb-O 2 Fe(II)Mb + O 2 k off k on Vs.

3 Co II Mb heme Cobalt (II) Histidine 93 Histidine 64 Protoporphyrin IX Cobalt (II) Myoglobin Protein Structure

4 Active Sites of oxy-FeMb and oxy-CoMb O2O Å 2.06 Å 2.77 Å 3.01 Å 2.95 Å 2.72 Å Brucker, Eric A.; Olson, John S.; Phillips, George N. Jr. J. Bio. Chem. 1996, 271,

5 Dissociation of Oxygen from Cobalt Myoglobin chemed.chem.purdue.edu/.../1biochem/blood3.html

6 Method Na 2 S 2 O 4 Oxymyoglobin was prepared by dissolving a measured amount in minimal buffer, and adding excess sodium dithionite. It was then passed through a G- 25 Sephadex column for purification. Known concentrations of both the hydrosulfite solution and the diluted myoglobin species were mixed in a vial and immediately added to a cuvette, where the reaction was monitored kinetically at predetermined wavelengths.

7 Absorption Spectrum for oxyCoMb and deoxyCoMb OxyCoMbDeoxyCoMb Porphyrin л  л* N-bandSoret-band Q-band d  d

8 Crystal Field Splitting and Distortion A. Eaton and J. Hofrichter, in Methods in Enzymology, Vol. 76, Academic Press, egeg t 2g b 1g (d x 2 -y 2 ) a 1g (d z 2 ) e g (d xz,d yz ) e g (d xy ) 3d Free metalOctahedral field Tetragonal field Rhombic field d yz d xz

9 Crystal Field Analysis Deoxy-Fe(II)Mb (3d 6, s=2) high spin weak field d x 2 -y 2 d z 2 d yz d xz d xy d x 2 -y 2 d z 2 d yz d xz d xy Oxy-Fe(II)Mb (3d 6, s=0) low spin strong field d x 2 -y 2 d z 2 d yz d xz d xy Deoxy-Co(II)Mb (3d 7, s=1/2) low spin strong field d x 2 -y 2 d z 2 d yz d xz d xy Oxy-Co(II)Mb (3d 7, s=1/2) low spin strong field A. Eaton and J. Hofrichter, in Methods in Enzymology, Vol. 76, Academic Press, 1981.

10 Absorption Spectrum for oxyMb  metMb 543 λ max OxyMb λ max metMb At low concentrations of dithionite (< 3.6 mM in solution), oxymyoglobin is observed to convert to the metmyoglobin species, with release of superoxide, rather than oxygen.

11 Absorption Spectrum of oxyMb  deoxyMb At a high concentration of dithionite ( ≈ 12 mM in solution), oxymyoglobin is observed to convert to the deoxygenated form, which indicates release of oxygen rather than superoxide.

12 Absorbance Changes oxyCoMb  deoxyCoMb Isosbestic point 426 nm 407 nm 532 nm571 nm 555 nm

13 Kinetic Results (Cobalt Myoglobin) Measurements performed using a UV-Visible Spectrophotometer (pH 7.0, 22°C). 426 nm (oxyCoMb) 407 nm (deoxyCoMb) μM oxyCoMb + 12 mM sodium Dithionite μM oxyCoMb mM sodium Dithionite

14 Kinetic Results (Native Myoglobin) Measurements performed using a UV-Visible Spectrophotometer (pH 7.0, 22°C). 417 nm (oxyMb) 409 nm (deoxyMb) μM oxyMb mM sodium Dithionite μM oxyMb mM sodium Dithionite

15 Calculation of x x(ε 426nm OxyCoMb ) + y(ε 426nm deoxyCoMb ) = A 1 /C i x(ε 407nm OxyCoMb ) + y(ε 407nm deoxyCoMb ) = A 2 /C i x is a fractional concentration and y= 1-x  x(ε 426nm OxyCoMb ) + (1-x)(ε 426nm deoxyCoMb ) = A 1 /C i  x(ε 426nm OxyCoMb ) + (-x)(ε 426nm deoxyCoMb ) + (ε 426nm deoxyCoMb )= A 1 /C i  x(ε 426nm OxyCoMb - ε 426nm deoxyCoMb ) + (ε 426nm deoxyCoMb )= A 1 /C i  x(ε 426nm OxyCoMb - ε 426nm deoxyCoMb ) = A 1 /C i - (ε 426nm deoxyCoMb )  x = A 1 /C i - (ε 426nm deoxyCoMb ) (ε 426nm OxyCoMb - ε 426nm deoxyCoMb )

16 Approximation of Dissociation Rate Constant At atmospheric levels of O 2 (≈ 234 μM), the dissociation rate of the axial ligand at the sixth coordinate position is approximately one order of magnitude faster in the Cobalt containing analog compared to the native species. Measurements were conducted using a UV-visible spectrophotometer (22 °C, pH 7.0, 12 mM Sodium Dithionite) ( μM) OxyCoMb  DeoxyCoMb K off = ( ) x s - K off = ( ) x s - ( μM) OxyMb  DeoxyMb t 1/2 = 62 s t 1/2 = 648 s

17 Interaction between the Metal Center and Oxygen Superoxide ion Both the Cobalt and Iron metal centers have resonance forms which involve a superoxide ion. Upon addition of the dithionite, numerous reactions may occur which include release of oxygen, reduction of the metal, release of superoxide and its reaction with two hydrogen ions to form hydrogen peroxide.

18 Possible Reaction of Fe in solution Compound 1Compound 2

19 Conclusions The studies of the dissociation of oxygen from the myoglobin analogs utilizing sodium dithionite were unsuccessful for several reasons. The concentration of dithionite was not great enough for the reaction to be pseudo first order. The reaction occurs too fast at such concentrations. The lengthy reduction of the metal species by dithionite and the use of an open system lead to the production of numerous radicals and species in various oxidation states, resulting in complex kinetic behavior. The rate of dissociation of oxygen from the cobalt analog should have been on the order of 10 3 s - while that of the native species should have been about two orders of magnitude less, based on previous temperature jump relaxation analysis. The dissociation of superoxide prior to reduction of the metal species by hydrosulfite was observed, but only an approximate rate of dissociation could be determined due to the complex nature of the reaction. This experiment could be improved by using the stopped-flow apparatus at low temperatures. Also, in place of hydrosulfite, a ligand which binds more strongly to the myoglobin may be more appropriate in determination of the rate of oxygen dissociation.

20 References [1] Hoffman, B. M.; Petering, D. H. Proc. Nat. Acad. Sci. 1970, 67, 637. [2] Spilburg, Curtis A.; Hoffman, Brian M.; Petering, Davind H. J. Bio. Chem. 1972, 247, [3] Brucker, Eric A.; Olson, John S.; Phillips, George N. Jr. J. Bio. Chem. 1996, 271, [4] Matsuo, Takashi; Tsuruta, Takashi; Maehara, Keiko; Sato, Hideaki; Hisaeda, Yoshio; Hayashi, Takashi. Inorg. Chem. 2005, 44, [5] Ikedai-Saito, Masao; Yamamoto, Haruhiko; Imai, Kiyohiro, Kayne, Frederick J.; Yonetani, Takashi. J. Bio. Chem. 1977, 252, [6] Yonetani, Takashi. J. Bio. Chem. 1967, 242, [7] Charles Dickinson [8] Alan Bruha [9] (1)Yamamoto, Haruhiko; Kayne, Frederick J.; Yonetani, Takashi. J. Bio. Chem. 1974, 249, (2) Yonetani, Takashi; Yamamoto, Haruhiko; Woodrow III, George V. J. Bio. Chem. 1974, 249, [10] Hambright, Peter, Lemelle, Stephanie. Inorganica Chimica Act, 92 (1984),