Structure of the HLA-DR10 β subunit and ligand binding sites.

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Structure of the HLA-DR10 β subunit and ligand binding sites. Structure of the HLA-DR10 β subunit and ligand binding sites. A, homology model of the β subunit. The red stick-form residues are the amino acids (Arg70, Arg71, Ala74, Val85) that affect Lym-1 binding to the protein. The yellow stick-form cysteine residues form the disulfide bond in the subunit that must be present for Lym-1 recognition of HLA-DR10. B, a solvent accessible surface representation of HLA-DR10. The blue residue is Arg70, an important residue in the Lym-1 epitope. The magenta area is binding site 1, and the cyan area is binding site 2. C, the solvent accessible surface representation of HLA-DR3 (left) and the solvent accessible surface representation of HLA-DR10 (right). Residues are color coded by charge: blue, positively charged; red, negatively charge; green, polar and not charged; white, hydrophobic. Note that the site 1 binding cavity is filled in for HLA-DR3, whereas it is a well-defined cavity in HLA-DR10. Rod Balhorn et al. Clin Cancer Res 2007;13:5621s-5628s ©2007 by American Association for Cancer Research