Discriminating Power of Localized Three-Dimensional Facial Morphology

Slides:



Advertisements
Similar presentations
Paul J. Norman, Jill A. Hollenbach, Neda Nemat-Gorgani, Wesley M
Advertisements

Three-dimensional comparison of facial morphology in white populations in Budapest, Hungary, and Houston, Texas  Troy Gor, Chung How Kau, Jeryl D. English,
Michael Dannemann, Janet Kelso  The American Journal of Human Genetics 
Transmission/Disequilibrium Tests for Extended Marker Haplotypes
Matan Goldshtein, David B. Lukatsky  Biophysical Journal 
Novel PMS2 Pseudogenes Can Conceal Recessive Mutations Causing a Distinctive Childhood Cancer Syndrome  Michel De Vos, Bruce E. Hayward, Susan Picton,
Improving Mutation Screening in Patients with Colorectal Cancer Predisposition Using Next-Generation Sequencing  Jean-Marc Rey, Vincent Ducros, Pascal.
The Mechanism of Na+/K+ Selectivity in Mammalian Voltage-Gated Sodium Channels Based on Molecular Dynamics Simulation  Mengdie Xia, Huihui Liu, Yang Li,
Volume 74, Issue 11, Pages (December 2008)
Zoran Brkanac, Jannine D. Cody, Robin J. Leach, Barbara R. DuPont 
Deficiency of the ADP-Forming Succinyl-CoA Synthase Activity Is Associated with Encephalomyopathy and Mitochondrial DNA Depletion  Orly Elpeleg, Chaya.
Abnormal Villous Morphology Associated with Triple Trisomy of Paternal Origin  Alexis Norris-Kirby, Jill M. Hagenkord, Malti P. Kshirsagar, Brigitte M.
Comparison of Microsatellites Versus Single-Nucleotide Polymorphisms in a Genome Linkage Screen for Prostate Cancer–Susceptibility Loci  Daniel J. Schaid,
Genomewide Scan for Prostate Cancer–Aggressiveness Loci
Genomewide Linkage Scan Identifies a Novel Susceptibility Locus for Restless Legs Syndrome on Chromosome 9p  Shenghan Chen, William G. Ondo, Shaoqi Rao,
Michael Cullen, Stephen P
Cohen Syndrome Is Caused by Mutations in a Novel Gene, COH1, Encoding a Transmembrane Protein with a Presumed Role in Vesicle-Mediated Sorting and Intracellular.
High-Resolution Mapping of Genotype-Phenotype Relationships in Cri du Chat Syndrome Using Array Comparative Genomic Hybridization  Xiaoxiao Zhang, Antoine.
A Combined Linkage-Physical Map of the Human Genome
Molecular Cytogenetic Evidence for a Common Breakpoint in the Largest Inverted Duplications of Chromosome 15  A.E. Wandstrat, J. Leana-Cox, L. Jenkins,
A Multicolor FISH Assay Does Not Detect DUP25 in Control Individuals or in Reported Positive Control Cells  Yanina Weiland, Jürgen Kraus, Michael R. Speicher 
A 77-Kilobase Region of Chromosome 6p22
A Novel Syndrome Combining Thyroid and Neurological Abnormalities Is Associated with Mutations in a Monocarboxylate Transporter Gene  Alexandra M. Dumitrescu,
The Structure of Linkage Disequilibrium at the DBH Locus Strongly Influences the Magnitude of Association between Diallelic Markers and Plasma Dopamine.
Recurrent Williams-Beuren Syndrome in a Sibship Suggestive of Maternal Germ-Line Mosaicism  Ali Kara-Mostefa, Odile Raoul, Stanislas Lyonnet, Jeanne Amiel,
Clinical Categories of Neuroblastoma Are Associated with Different Patterns of Loss of Heterozygosity on Chromosome Arm 1p  Jaume Mora, Nai-Kong V. Cheung,
Volume 139, Issue 1, Pages e24 (July 2010)
Myotonic Dystrophy Type 2: Human Founder Haplotype and Evolutionary Conservation of the Repeat Tract  Christina L. Liquori, Yoshio Ikeda, Marcy Weatherspoon,
Identification of an Interstitial Deletion in an Adult Female with Schizophrenia, Mental Retardation, and Dysmorphic Features: Further Support for a Putative.
Michael Dannemann, Janet Kelso  The American Journal of Human Genetics 
Large-Scale Conformational Dynamics of the HIV-1 Integrase Core Domain and Its Catalytic Loop Mutants  Matthew C. Lee, Jinxia Deng, James M. Briggs, Yong.
Evidence for Widespread Reticulate Evolution within Human Duplicons
Emily C. Walsh, Kristie A. Mather, Stephen F
Frontorhiny, a Distinctive Presentation of Frontonasal Dysplasia Caused by Recessive Mutations in the ALX3 Homeobox Gene  Stephen R.F. Twigg, Sarah L.
A Flexible Bayesian Framework for Modeling Haplotype Association with Disease, Allowing for Dominance Effects of the Underlying Causative Variants  Andrew.
Mechanism, Prevalence, and More Severe Neuropathy Phenotype of the Charcot- Marie-Tooth Type 1A Triplication  Pengfei Liu, Violet Gelowani, Feng Zhang,
Genomewide Scan for Prostate Cancer–Aggressiveness Loci
Fine Mapping of the Split-Hand/Split-Foot Locus (SHFM3) at 10q24: Evidence for Anticipation and Segregation Distortion  Rýdvan S. Özen, Bora E. Baysal,
Naoto Yagi, Hiroyuki Iwamoto, Jun’ichi Wakayama, Katsuaki Inoue 
Adam W. Van Wynsberghe, Qiang Cui  Biophysical Journal 
E. Wang, Y. -C. Ding, P. Flodman, J. R. Kidd, K. K. Kidd, D. L
Molecular and Fluorescence In Situ Hybridization Characterization of the Breakpoints in 46 Large Supernumerary Marker 15 Chromosomes Reveals an Unexpected.
Hal M. Hoffman, Fred A. Wright, David H. Broide, Alan A
Genetic studies into inherited and sporadic hemolytic uremic syndrome
Increased Level of Linkage Disequilibrium in Rural Compared with Urban Communities: A Factor to Consider in Association-Study Design  Veronique Vitart,
Disrupted in Schizophrenia 1 (DISC1): Association with Schizophrenia, Schizoaffective Disorder, and Bipolar Disorder  Colin A. Hodgkinson, David Goldman,
Shuhua Xu, Wei Huang, Ji Qian, Li Jin 
Molecular Analysis of the β-Globin Gene Cluster in the Niokholo Mandenka Population Reveals a Recent Origin of the βS Senegal Mutation  Mathias Currat,
Katy Hanlon, Lorna W. Harries, Sian Ellard, Claudius E. Rudin 
Volume 85, Issue 4, Pages (October 2003)
Linkage Analysis Identifies a Novel Locus for Restless Legs Syndrome on Chromosome 2q in a South Tyrolean Population Isolate  Irene Pichler, Fabio Marroni,
James A. Lautenberger, J. Claiborne Stephens, Stephen J
Novel PMS2 Pseudogenes Can Conceal Recessive Mutations Causing a Distinctive Childhood Cancer Syndrome  Michel De Vos, Bruce E. Hayward, Susan Picton,
Hisashi Ishida, Steven Hayward  Biophysical Journal 
Identifying Novel Genes for Atherosclerosis through Mouse-Human Comparative Genetics  Xiaosong Wang, Naoki Ishimori, Ron Korstanje, Jarod Rollins, Beverly.
Genomewide Search and Genetic Localization of a Second Gene Associated with Autosomal Dominant Branchio-Oto-Renal Syndrome: Clinical and Genetic Implications 
Judith L. Ross, David Roeltgen, Harvey Kushner, Fanglin Wei, Andrew R
A Second Recombination Hotspot Associated with SHOX Deletions
Constitutional Mutations of the hSNF5/INI1 Gene Predispose to a Variety of Cancers  Nicolas Sévenet, Eammon Sheridan, Daniel Amram, Pascale Schneider,
A Deletion Mutation in COL17A1 in Five Austrian Families with Generalized Atrophic Benign Epidermolysis Bullosa Represents Propagation of an Ancestral.
Markers for Mapping by Admixture Linkage Disequilibrium in African American and Hispanic Populations  Michael W. Smith, James A. Lautenberger, Hyoung.
NSD1 Mutations Are the Major Cause of Sotos Syndrome and Occur in Some Cases of Weaver Syndrome but Are Rare in Other Overgrowth Phenotypes  Jenny Douglas,
C. E. Browne, N. R. Dennis, E. Maher, F. L. Long, J. C. Nicholson, J
Matthew A. Saunders, Jeffrey M. Good, Elizabeth C. Lawrence, Robert E
Alice S. Whittemore, Jerry Halpern 
Interactions of the Auxilin-1 PTEN-like Domain with Model Membranes Result in Nanoclustering of Phosphatidyl Inositol Phosphates  Antreas C. Kalli, Gareth.
Cohen Syndrome Is Caused by Mutations in a Novel Gene, COH1, Encoding a Transmembrane Protein with a Presumed Role in Vesicle-Mediated Sorting and Intracellular.
Naoto Yagi, Hiroyuki Iwamoto, Jun’ichi Wakayama, Katsuaki Inoue 
High-Resolution Identification of Chromosomal Abnormalities Using Oligonucleotide Arrays Containing 116,204 SNPs  Howard R. Slater, Dione K. Bailey, Hua.
Bruce Rannala, Jeff P. Reeve  The American Journal of Human Genetics 
Presentation transcript:

Discriminating Power of Localized Three-Dimensional Facial Morphology Peter Hammond, Tim J. Hutton, Judith E. Allanson, Bernard Buxton, Linda E. Campbell, Jill Clayton-Smith, Dian Donnai, Annette Karmiloff-Smith, Kay Metcalfe, Kieran C. Murphy, Michael Patton, Barbara Pober, Katrina Prescott, Pete Scambler, Adam Shaw, Ann C.M. Smith, Angela F. Stevens, I. Karen Temple, Raoul Hennekam, May Tassabehji  The American Journal of Human Genetics  Volume 77, Issue 6, Pages 999-1010 (December 2005) DOI: 10.1086/498396 Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 1 Facial phenotypes. A, Control; B, 22q11DS; C, NS; D, SMS; and E, WS. Each series is generated using a regression model of age and the first PCA mode of a DSM generated from faces in a homogeneous subgroup. The sequences do not use a common scale. The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 2 Illustration of the three localized face patches used in the discrimination testing. Left, periorbital; center, perinasal; and right, perioral. The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 3 Portrait and profile views of average faces for the controls and for each syndrome (not to a common scale). A, 22q11DS; B, Control; C, SMS; D, WS; E, Control adults; F, NS; G, WS adults. Face shape differences are better evaluated by viewing the dynamic morphs on the Eastman Dental Institute Web site. The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 4 Alternative, cartoon representations of the control-syndrome discrimination performance in table 1. Each large ellipse represents the face, and the smaller inner ellipses represent the periorbital, perinasal, and perioral patches. The darkness of the shading of each ellipse reflects the classification performance, with black representing the lowest of the control-syndrome entries (at 81%), and white the highest. Thus, the darker the shading, the lower the classification performance. The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 5 Comparison of exaggerated average faces of syndromic groups with the average control. Upper left, NS; upper right, SMS; lower left, 22q11DS; and lower right, WS. The color coding reflects the distance between the compared face surfaces. Red, regions most distant and internal to the mean control face. Blue, regions most distant and external. Other colors shown in the scales identify intermediate positions. Each figure has its own quantitative scale and also uses a different “zero” color for regions where the two surfaces coincide. It is not possible to employ a single scale to show both subtle and gross surface differences. Therefore, care must be taken in their interpretation. The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 6 Average classification position between control and WS mean faces, for faces of four selected adults with WS for 20 DSMs computed from the randomized 90%–10% splits used to calculate average discrimination performance. CIs of 95% have been added to the average classification position. The background scatterplot shows the classification position of the 20 unseen test sets for the relevant DSM. The vertical broken lines mark the position of the two means at −1 and +1 respectively. All other positions are normalized to [−1,+1]. The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 7 Average classification of four selected individuals with WS for the three localized face patches The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions

Figure 8 Summary of microsatellite analysis of polymorphic markers in the chromosome 7q11.23 deleted region in four putative WS patients. Note that genes around the microsatellite loci as well as the approximate distance between markers are shown at the bottom of the figure. ID = Patient identifier. U = Uninformative. ND = Not deleted. N/A = Not available. D = Deleted. p = Paternal allele. m = Maternal allele. The American Journal of Human Genetics 2005 77, 999-1010DOI: (10.1086/498396) Copyright © 2005 The American Society of Human Genetics Terms and Conditions