Transcription Factors Extra Levels of Control
What? Transcription factors (TF) diffusible proteins act at numerous sites on many chromosomes Influence transcription by interacting with other proteins or segments of DNA “Upstream” = being 5’ to the start site Negative numbers of bases “Downstream” = being 3’ to the start site Positive numbers of bases
Why? Finer control over transcription Recruits RNA Polymerase II Selective expression of specific genes Protection of promoter sequences Protection from denaturation & proteolysis TATA box, upstream promoter element (UPE), Pribnow box, CpG islands, CAAT box, -10 to -35 Adoption of specific 3D conformation of DNA
Upstream Promoter Element (UPE)
Transcription Inhibition
Where? Promoter & enhancer sequences on DNA On transcriptional elements (TE) or enhansons In the “open complex” of DNA In the origin region of DNA In the helix-loop-helix motif In leucine zippers In zinc fingers
TATA box binding
Zinc fingers
Zinc Finger II March 2007 Molecule of the Month by David Goodsell doi: 10.2210/rcsb_pdb/mom_2007_3
http://www.uic.edu/classes/bios/bios100/mike/spring2003/leucinezipper.jpg
Helix-loop-helix n0b311a.blogspot.com
Helix-turn-helix FEMS Microbiology Reviews 29 (2005) 231–262