Numerical Modeling of Dynamics and Adhesion of Leukocytes

Slides:



Advertisements
Similar presentations
My First Fluid Project Ryan Schmidt. Outline MAC Method How far did I get? What went wrong? Future Work.
Advertisements

FLUID MECHANICS FOR CHEMICAL ENGINEERS. Introduction Fluid mechanics, a special branch of general mechanics, describes the laws of liquid and gas motion.
Dialysis: A Thermodynamic Perspective Alyssa Chang, Austin Dosch, Meredith Greeson, Carrie Martin, Bobby Palmer.
Lecture 2 Properties of Fluids Units and Dimensions.
Introduction: Gravitational forces resulting from microgravity, take off and landing of spacecraft are experienced by individual cells in the living organism.
Dr. Kirti Chandra Sahu Department of Chemical Engineering IIT Hyderabad.
4/15/ :21 PM 7.3 Cell Transport © 2007 Microsoft Corporation. All rights reserved. Microsoft, Windows, Windows Vista and other product names are.
Chapter 2: Properties of Fluids
II. Properties of Fluids. Contents 1. Definition of Fluids 2. Continuum Hypothesis 3. Density and Compressibility 4. Viscosity 5. Surface Tension 6. Vaporization.
Results It was found that variations in wettability disturb the flow of adjacent liquid (Fig. 3). Our results suggest that for a given liquid the normal.
Momentum flux across the sea surface
Direct numerical simulations of droplet emulsions in sliding bi-periodic frames using the level-set method See Jo Wook Ryol Hwang*
Cell Membrane Movement. _____ tends to diffuse from an area of ____ water concentration to an area of _____ water concentration.
Copyright Pearson Prentice Hall
The UNIVERSITY of NORTH CAROLINA at CHAPEL HILL Intro to Computational Fluid Dynamics Brandon Lloyd COMP 259 April 16, 2003 Image courtesy of Prof. A.
Lecture 7 Flow of ideal liquid Viscosity Diffusion Surface Tension.
Role of Surfactant in Respiration, Viscosity and Viscous force
Passive Transport across Membranes Osmosis. Learning Objectives - Explain what is meant by osmosis, in terms of water potential. (No calculations of water.
ME 231 Thermofluid Mechanics I Navier-Stokes Equations.
Conservation Laws for Continua
Simulation of Droplet Drawback in Inkjet Printing
A Hybrid Particle-Mesh Method for Viscous, Incompressible, Multiphase Flows Jie LIU, Seiichi KOSHIZUKA Yoshiaki OKA The University of Tokyo,
PTT 204/3 APPLIED FLUID MECHANICS SEM 2 (2012/2013)
Introduction to biophysics Course Plan Course Contents Reference Books.
A Unified Lagrangian Approach to Solid-Fluid Animation Richard Keiser, Bart Adams, Dominique Gasser, Paolo Bazzi, Philip Dutré, Markus Gross.
Starr & Taggart – 11 th Edition A Closer Look at Cell Membranes AP Biology: Chapter 5.
Example: Radially Polarized Tube. Introduction This is a 2D static axisymmetric piezoelectric benchmark problem A radially polarized piezoelectric tube.
Geometry Group Summer 08 Series Toon Lenaerts, Bart Adams, and Philip Dutre Presented by Michael Su May
J.-Ph. Braeunig CEA DAM Ile-de-FrancePage 1 Jean-Philippe Braeunig CEA DAM Île-de-France, Bruyères-le-Châtel, LRC CEA-ENS Cachan
Ale with Mixed Elements 10 – 14 September 2007 Ale with Mixed Elements Ale with Mixed Elements C. Aymard, J. Flament, J.P. Perlat.
7-3 Cell Boundaries Photo Credit: © Quest/Science Photo Library/Photo Researchers, Inc.
Governing Equations Conservation of Mass Conservation of Momentum Velocity Stress tensor Force Pressure Surface normal Computation Flowsheet Grid values.
CP502 Advanced Fluid Mechanics
Diffusion and Osmosis. Passive Transport Passive transport- movement of molecules across a cell membrane without energy input Refresh: Solute Object being.
Passive Transport transport of molecules across the cell membrane that does not require energy! 3 Types: 3 Types: 1) Diffusion 2) Osmosis 3) Facilitated.
1 CONSTITUTIVE RELATION FOR NEWTONIAN FLUID The Cauchy equation for momentum balance of a continuous, deformable medium combined with the condition of.
CP502 Advanced Fluid Mechanics
CFX Slide serial no 1 © 2003 ANSYS CFX CFX-5.6 Multiphase Course Free Surface Lecture 5 Free Surface Flow.
Water Potential  The free energy per mole of water  Calculated from two components: Solute potential (osmotic pressure) Pressure potential (turgor pressure)
End Show 7-3 Cell Boundaries Slide 1 of 47 Copyright Pearson Prentice Hall Diffusion Through Cell Boundaries Every living cell exists in a liquid environment.
Remark: foils with „black background“ could be skipped, they are aimed to the more advanced courses Rudolf Žitný, Ústav procesní a zpracovatelské techniky.
Grace Levine.
Chapter 4 Fluid Mechanics Frank White
Part IV: Detailed Flow Structure Chap. 7: Microscopic Balances
Cellular Transport.
Rejection and Mass Transport in Membranes
Schley County Middle School Science w/ Coach Blocker
MAE 5130: VISCOUS FLOWS Examples Utilizing The Navier-Stokes Equations
Copyright Pearson Prentice Hall
Lecture 49 More on Phase Transition, binary system
Schley County Middle School Science w/ Coach Blocker
1. Density y Volume,  Mass, m C Elemental Volume,   Mass, m x z.
Chapter 3 Cells Copyright  The McGraw-Hill Companies, Inc. Permission required for reproduction or display.
Fluids.
topic8_NS_vectorForm_F02
Cellular Transport.
Cellular Transport Chapter 7.
Copyright Pearson Prentice Hall
MAE 3241: AERODYNAMICS AND FLIGHT MECHANICS
Physical pharmacy Lab (6) Viscosity
topic8_NS_vectorForm_F02
Volume 95, Issue 1, Pages (July 2008)
Convective Heat Transfer
Transport through Membrane
Nano-to-Micro Scale Dynamics of P-Selectin Detachment from Leukocyte Interfaces. III. Numerical Simulation of Tethering under Flow  Michael R. King, Volkmar.
Hydrodynamics Presented by Mr.Halavath Ramesh M.A,M.sc,B.ED,PGDCAQM,PGDCA,M.Phil,(P.HD)(UoH) University of Madras Dept.
Anthony D. Fick & Dr. Ali Borhan Governing Equations
Introduction to Fluid Mechanics
Lecture Fluids.
Presentation transcript:

Numerical Modeling of Dynamics and Adhesion of Leukocytes A. Golpayegan and N. Ashgriz 9/22/2018

Outline Introduction Leukocyte biomechanical model Governing equations and the boundary conditions Body forces Numerical methodology Interface tracking method Solution procedure

Introduction Leukocytes are the main part of human defense system They have a radius of about 8 micro meter 1% of the total volume of blood They have larger volume and lower deformability than red blood cells Leukocytes play an important role in the microcirculatory flows (they migrate to tissue in response to cuts or infections)

Ref: http://hsc.virginia.edu/medicine/basic-sci/biomed/ley/ Process Rotation Activation and merging Deformation Adhesion (Specific molecular binding) Migration Ref: http://hsc.virginia.edu/medicine/basic-sci/biomed/ley/

Micropipette Aspiration A method to determine viscosity of leukocyte A small suction pressure is applied to deform leukocyte Viscosity calculated based on amount of deformation and pressure difference Authors operation condition Cell Apparent Viscosity (Poise) Dong et al., 1988 small deformation 300 Evan and Yeung, 1989 large deformation 1000-2000 Dong et al., 1991 200-2000 Hochmuth et al., 1993 600 Waugh and Tsai, 1994 1000-1500 Bathe et al. 2002 31

Apparent Viscosity Viscosity is a function of Rate of deformation Amount of deformation Holding time in micropipette Multi-layer model is capable of explaining behaviors High deformation rate Response of cytoplasm is rapid Lower Viscosity Nucleus deforms little

Mechanical Model Multi-component droplet ( Nucleus, cytoplasm and membrane) Newtonian Fluid Outer Layer (membrane) Inner layer (Nucleus) Middle layer (cytoplasm) How can the changes in the observed viscosities be explained?

Apparent Viscosity(Continue) Observation directing researchers conclude other than Newtonian behavior for leukocyte: -Viscosity decreases when the cell recovers from smaller deformation (Hochmuth et al. 1993) The cell is aspirated into a relatively large pipet and the nucleus does not have to deform very much. Recovery is governed mainly by cytoplasmic layer producing lower viscosity -Viscosity increases when the cell undergoes large deformation (Evan and Yeung, 1998) - The cell is aspirated into a relatively small pipet and highly viscous nucleus must deform leading to a higher cell apparent.

Problem associated Need to control the process (reinforce or prevent it)

Leukocyte Model Multi-component droplet ( Nucleus, cytoplasm and membrane) Newtonian Fluid Interface membranes are represented by a surface tension model Outer Layer (membrane) Inner layer (Nucleus) Middle layer (cytoplasm)

Outflow boundary condition Boundary Conditions No slip Inflow and outflow Surface tension acts as a boundary between each two fluids???? Computational Domain Outflow boundary condition Inflow Outflow Coarse grid Fine grid Wall effects fects

Governing Equations Momentum equation Continuity equation Proper boundary condition and initial condition Body forces: Surface tension Adhesion

Body force resulting from Surface tension Continuum Surface model (CSF) Surface tension is formulated as an equivalent body force : Unit normal Curvature

Body force resulting from Adhesion = Bonds have a preferred bond length with minimal free energy. kf kr

Concentration of adhesive bonds Diffuse during Adhesion With the rate “r” Active Leukocytes Passive Leukocytes Concentration of adhesive bonds Diffusion - reaction equation:

Reaction rate r = exp ( exp (

Non-specific interactions Resistance of polymers to compression, osmotic tendency of water molecules Electrostatic forces exp

Numerical methodology Fixed, staggered grids (Eulerian) two-step projection method for pressure calculation Boundary condition

Interface tracking using VOF Initial interface geometry is used to compute volumetric fractions: B A C E D A B C D E

VOF Implementation Advection of “volumetric function” satisfies Surface reconstruction F- field used to determine normal vectors Decide the type of “case” using normal Position plane with known slope based upon volume fraction Compute plane area and vertices Fluid Advection Compute flux across cell sides Operator Split ( for x, y and z sweep)