Molecular Mechanism of Hydrogen-Formation in Fe-Only Hydrogenases

Slides:



Advertisements
Similar presentations
Infrared in Organometallic compounds
Advertisements

162 Chapter 19: Carboxylic Acid Derivatives: Nucleophilic Acyl Substitution 19.1: Nomenclature of Carboxylic Acid Derivatives (please read)
Updates Assignment 05 is is due Monday, Mar. 05 (in class) Midterm 2 is Thurs., March 15 –Huggins 10, 7-8pm –For conflicts: ELL 221, 6-7pm (must arrange.
Organometallic Compounds
Lectures Molecular Bonding Theories 1) Lewis structures and octet rule
Unit 4 Acid-base and donor-acceptor chemistry Hard and soft acids and bases Miessler/Tarr Ch. 6 Graduate Center Advanced Inorganic Chemistry (Fall 2010)
Metal-Metal Bonds Chapter 15. Metal-Metal Bonds Single, double, triple, and quadruple bonds are possible in transition metal complexes. –Figure 15-7;
165 Chapter 20: Carboxylic Acid Derivatives: Nucleophilic Acyl Substitution 20.1: Nomenclature of Carboxylic Acid Derivatives (please read)
Infrared Spectroscopy
Infrared spectroscopy of Li(methylamine) n (NH 3 ) m clusters Nitika Bhalla, Luigi Varriale, Nicola Tonge and Andrew Ellis Department of Chemistry University.
INFRARED SPECTROSCOPY (IR)
KHS ChemistryUnit 3.4 Structural Analysis1 Structural Analysis 2 Adv Higher Unit 3 Topic 4 Gordon Watson Chemistry Department, Kelso High School.
Nuclear Magnetic Resonance Spectroscopy. The Use of NMR Spectroscopy Used to map carbon-hydrogen framework of molecules Most helpful spectroscopic technique.
12. Structure Determination: Mass Spectrometry and Infrared Spectroscopy Based on McMurry’s Organic Chemistry, 7th edition.
Srinivasan S. Iyengar Department of Chemistry, Indiana University Effect of water on structure, reactivity and vibrational properties of fundamental ions:
Theoretical Study of Photodissociation dynamics of Hydroxylbenzoic Acid Yi-Lun Sun and Wei-Ping Hu* Department of Chemistry and Biochemistry, National.
Reactions of organometallic complexes Textbook H: Chapter 5.1 – 5.5 Textbook A: Chapter 5.
CHEM 344 Spectroscopy of Organic Compounds Lecture 1 4th and 5 th September 2007.
1 Aromatic Compounds Aromatic was used to described some fragrant compounds in early 19 th century but are now grouped by chemical behavior (unsaturated.
Short Answer: 1) What type of electromagnetic radiation is used in nuclear magnetic resonance? radio 2) What is the most abundant peak in a mass spectrum.
Chapter 2: IR Spectroscopy Paras Shah
Manifestation of Nonadiabatic Effects in the IR Spectrum of para-Benzoquinone Radical Cation Krzysztof Piech, Thomas Bally Department of Chemistry, University.
1 A Study of Hydroxycyclohexadienyl Radical Absorption Using Time-Resolved Resonance Raman Spectroscopy Deanna O’Donnell University of Notre Dame Radiation.
Sequential Oxidation of Group 6 Transition Metal Suboxide Clusters Caroline Chick Jarrold Department of Chemistry, Indiana University November 30, 2015.
Infrared Spectroscopy & Structures of Mass-Selected Rhodium Carbonyl & Rhodium Dinitrogen Cations Heather L. Abbott, 1 Antonio D. Brathwaite 2 and Michael.
9 9-1 Copyright © 2000 by John Wiley & Sons, Inc. All rights reserved. Introduction to Organic Chemistry 2 ed William H. Brown.
Infrared Photodissociation Spectroscopy of TM + (N 2 ) n (TM=V,Nb) Clusters E. D. Pillai, T. D. Jaeger, M. A. Duncan Department of Chemistry, University.
TEMPLATE DESIGN © Synthesis and Coordination Chemistry of the Novel Ligand N,N’-bis(2-pyridylmethyl)-bis(ethylacetate)-1,2-ethanediamine.
Quantum Chemical Cluster Studies of Ice-Bound Reactions of Formaldehyde (H 2 CO), Acetaldehyde (CH 3 CHO), or Acetone (CH 3 COCH 3 ) with Ammonia (NH 3.
Towards Isolation of Organometallic Iridium Catalytic Intermediates Arron Wolk Johnson Laboratory Thursday, June 20 th, 2013.
Infrared Spectra of Chloride- Fluorobenzene Complexes in the Gas Phase: Electrostatics versus Hydrogen Bonding Holger Schneider OSU International Symposium.
1 HOONO ISOMERIZATION TO HONO 2 INVOLVING CONICAL INTERSECTIONS T. J. DHILIP KUMAR, and JOHN R. BARKER Department of Atmospheric, Oceanic and Space Sciences,
12. Structure Determination: Mass Spectrometry and Infrared Spectroscopy Based on McMurry’s Organic Chemistry, 6 th edition.
Why no  -H species into the enzyme? - no thermodynamic stabilization of terminal-H intermediates terminal-H corresponds to a kinetic product? But.
Detection of Charge Distribution in Diiron Hydrogenase Model Complexes by Regioselective Ligand Substitution Reactions Ryan D. Bethel †, Danielle J. Crouthers.
Hydrogen-bond between the oppositely charged hydrogen atoms It was suggested by crystal structure analysis. A small number of spectroscopic studies have.
INFRARED SPECTROSCOPY OF (CH 3 ) 3 N-H + -(H 2 O) n (n = 1-22) Ryunosuke Shishido, Asuka Fujii Department of Chemistry, Graduate School of Science, Tohoku.
O. PIRALI, J. OOMENS, N. POLFER FOM Rijnhuizen, 3439MN Nieuwegein, The Netherlands Y. UENO, R. MABOUDIAN Department of Chemical Engineering, U.C. Berkeley,
Infrared Spectroscopy
Laser spectroscopy of a halocarbocation: CH 2 I + Chong Tao, Calvin Mukarakate, and Scott A. Reid Department of Chemistry, Marquette University 61 st International.
Essential Organic Chemistry
Essential Organic Chemistry
John E. McMurry Paul D. Adams University of Arkansas PREVIEW TO CARBONYL CHEMISTRY.
Infra-red Spectroscopy
Chemical Bonding I: The Covalent Bond
Time Resolved Infrared Spectroscopy
Three-dimensional reconstruction of mesoporous materials from gas adsorption and structure factor data Lev D. Gelb, Department of Chemistry, Washington.
Infrared spectroscopic investigation
Case Western Reserve University
Sites of Protonation and Ligand Migration in Bimetallic Organometallic Complexes Roger L. DeKock, Department of Chemistry, Calvin College, Grand Rapids,
Introduction Spectroscopy is an analytical technique which helps determine structure. It destroys little or no sample. The amount of light absorbed by.
E. D. Pillai, J. Velasquez, P.D. Carnegie, M. A. Duncan
Analytical methods Prepared By Dr. Biswajit Saha.
Molecular Mechanism of Hydrogen-Formation in Fe-Only Hydrogenases
Quantum Chemical Studies of Low-Energy Pathways to
New Catalysis with Nickel Pincer Complexes
International Symposium on Molecular Spectroscopy, June 22-26, 2015
Organic Chemistry II Chapter 22 Carbonyl Alpha-Substitution Reactions
The d block: The d block consists of three horizontal series in periods 4, 5 & 6 10 elements in each series Chemistry is “different” from other elements.
UNIT FIVE KEY TOPICS Chapters 10/11 Alcohols Acidity of alcohols 1
James A. Birrell, Olaf Rüdiger, Edward J. Reijerse, Wolfgang Lubitz 
Rational Design and Synthesis of Structural Analog Complexes of the Active Site of Ni-Fe Hydrogenases Jianfeng Jiang, Department of Chemistry, Yeshiva.
Chapters 20/21 carboxylic acids and derivatives
James A. Birrell, Olaf Rüdiger, Edward J. Reijerse, Wolfgang Lubitz 
Heat evolved upon catalytic hydrogenation (DHo)
LEQ: How do molecules form from atoms?
Presentation On INFRARED SPECTROSCOPY
5-ish Slides About Bridging Hydrides and [Cr(CO)5HCr(CO)5]-1
A Delocalized Proton-Binding Site within a Membrane Protein
Chapter 13 Lecture 1 Organometallic Ligands and Bonding
Presentation transcript:

Molecular Mechanism of Hydrogen-Formation in Fe-Only Hydrogenases Nicolai Lehnert, Department of Chemistry, University of Michigan, Ann Arbor, MI 48109 Hydrogenase models: [Fe2(pdt)(dppv)2(CO)2(H)]+ terminal and bridging hydride isomers Spectroscopy. The H-term and m-H isomers of [Fe2(pdt)(dppv)2(CO)2(H)]+ (see Figure) model the key protonated intermediate of the active site of Fe-only hydrogenase. Resonance Raman and IR spectroscopy show distinct differences between the two isomers in the n(Fe-CO) (440-520 cm-1) and n(C=O) (1800-2000 cm-1) stretching regions. However, the n(Fe-H) stretch of H-term, which is the proposed catalytically active form for H2 production, is not observed. The overall weak Raman intensity and the strong signals from the phenyl groups in IR pose serious problems in identifying the important n(Fe-H) stretching mode. DFT calculations predict n(Fe-H) at 2000 cm-1 for H-term and at 1294/1351 cm-1 for m-H. Further spectroscopic studies of an analogous compound where the dppv ligands are replaced by PMe3, [Fe2(edt)(PMe3 )4(CO)2(H)]+, will be performed next to overcome this problem. DFT calculations. Initial computations show that the m-H isomer is 5 – 12 kcal/mol (depending on the DFT functional) more stable than H-term, in agreement with experiment. This suggests that the decreased reactivity of m-H toward acids could simply be due to the distinctively lower total energy of this complex compared to H-term. A detailed analysis of the MO diagrams of both isomers indicates that the atomic charge of hydride is similar in these cases. This is surprising, since one would intuitively think that the terminal hydride is a weaker donor. This result implies that the total charge of the bound hydride does not contribute to the difference in reactivity (no charge control). However, the MO diagrams reveal one important difference between the complexes: the H-term isomer has a key molecular orbital (MO <139>, see left) at relatively high energy that shows a strong hydride(1s) contribution of 23%. No corresponding feature is present for the m-H complex (the closest is MO <138>, see left). This indicates a possible orbital control of the reaction of the complexes with acid. This aspect requires further study. H-term contour plot of MO <139> m-H contour plot of MO <138>