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High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Raman Study of Amino Acids at High Pressures Alanine and its mutimer crystal Korea University.

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Presentation on theme: "High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Raman Study of Amino Acids at High Pressures Alanine and its mutimer crystal Korea University."— Presentation transcript:

1 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Raman Study of Amino Acids at High Pressures Alanine and its mutimer crystal Korea University Div. of Chemistry & Molecular Engineering Seung-Joon Jeon

2 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon High Pressure Study Pressure Unit : 1 bar = 10 5 pascal(Pa) = 0.9869 atm 1 GPa = 10Kbar  10 4 atm Pressure Effect in Materials - Isolation of effect on interatomic and/or intermolecular interaction - Phase transtion - Insulator-metal transition Experimental techniques - Dynamic method : shock wave - Static method : pressure cell Diamond Anvil Cell(DAC)

3 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Diamond Anvil Cell(DAC) Sampling part

4 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Diamond Anvil Cell

5 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Pressure calibration with ruby fluorescence Doublet : R1 - 694.2 nm R2 - 692.7 nm Red Shift almost linearly with pressure up to 30 GPa P(GPa) = 380.8{(x/694.2 + 1) 5 - 1} x: R 1 shift with nm Band width is sensitive to hydrostatic condition

6 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Ruby fluoresence shift with pressure Wavelength (A o )

7 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon L-Alanine - Simplest chiral amino acid - Molecular crystal with inter- and/or intra- hydrogen bonding molecule C 1 symmetry crystal orthorombic at 1 atm and room T space group P2 1 2 1 2 1 unit cell dimension : a= 6.032, b= 12.343, c=5.784 A Vibrational mode Internal mode: 33 fundamental molecular vibration modes Phonon mode: 6A + 5B(x) + 5B(y) + 5B(z) A sym -6 optical Raman active & IR inactive B sym -15 optical Raman & IR both active L-alanyl-L-alanine Crystal tetragonal space group, I4 unit cell : a=17.985, c= 5.154 A molecular packing : 4-fold sym

8 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Tri-L-Alanine -Two different crystal form parallel-chain sheet arrangement(P) – platelet form Antiparallel-chain pleated sheet arrangement (AP)– needle form -Ala 3 (P) monoclinic, space group P21, unit cell : a=9.862Å, b=10.004Å, c= 11.849Å  =101.3°, Z=4

9 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Experimental Sample : Aldrich (99+%), powdered High pressure : DAC Gasket : thickness 250  m steinless steel 300  m diameter hole Pressure calibration : Ruby fluorescence Raman : Jovin-Yvon U-1000 1.0m double monochromator PMT + photon counting Back scattering geometry IR : Bomem MB102 FT-IR with Spectra-Bench beam condenser

10 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Crystal structure L-alanine L-alanyl-L-alanine

11 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Molecular structure L-alanine L-alanyl-L-alanine

12 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Ackowlegement Coworker Prof. Hackjin Kim (Chungnam Univ) Prof. Hogyu Han (Korea Univ) Students - Hang Sun Ahn (Ph. D student) - Yong Ho Jung (MS student) Financial support - KOSEF - KOSEF-SRC(CMR-Korea Univ.)

13 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Conformation Change(or Phase transition) L-Alanine : 2 - 3 GPa L-Alanyl-L-alanine : 3.5-4.5 Gpa Tri-L-Alanine : 2.3-3GPa - No evidence of polymerization reaction - dimer : intermolecular H-bonding  intramolecular H-bonding with rotation of C-C and C-N maybe ruduce more in c-axis than in a-axis - The conformation changes shows hysteresis

14 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Raman spectrum of L-Alanine

15 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon IR spectrum of L-alanine

16 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon The d /dp of modes of L-alanine

17 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon IR spectrum of L-Alanyl-L-Alanine

18 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon IR spectrum of L-Alanyl-L-Alanine

19 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon The d /dp of modes of L-Alanyl-L-alanine

20 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Pressure induced frequency change of modes of L-Alanyl-L-Alanine

21 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon The calculated frequency at different conformations L-Alanyl-L-Alanine : Amide III mode

22 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Ab initio calculation with conformations Basis set : 6-31G L-Alanyl-L-Alanine

23 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon The optimized dihedral angle of peptide bond

24 High Pressure Raman Korea Univ. Dept. of Chemistry Seung-Joon Jeon Raman Shift of Ala 3 (P)


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