2. 09/22/15 Discussion Questions 1. What are the most common elements found in living things? 2. What do you think are the major biomolecules found in living things that are made from those elements? Please answer the following using Chapter 6

3. 09/22/15 1.Carbon, Hydrogen Oxygen, Nitrogen, Phosphorous, Calcium Carbon, Hydrogen Oxygen, Nitrogen, Phosphorous, CalciumCarbon, Hydrogen Oxygen, Nitrogen, Phosphorous, Calcium 2.Carbohydrates, Proteins, Lipids and Nucelic Acids Carbohydrates, Proteins, Lipids and Nucelic AcidsCarbohydrates, Proteins, Lipids and Nucelic Acids Discussion Question

4. Reminders Biochemistry Root words given out Thursday- Quiz Mon, 9- 28-15 Biochemistry Review packet 1 given out Thursday test date Tuesday, 9-29-15 Review packets: Atoms and Nature of Matter given out today. ALL are DUE TEST DAY Read chapter 6 Refer to your Science Rules and Procedures Class brochure for retest policy and other impt. information Tomorrow I will be off campus Next Science Fair due date ~ 10-9-15 and will be the final draft of your background research report.

5. QUIZ Clear your desks of everything Do NOT write on the quiz please Use CAPITAL letters please Keep your answers covered If you need to make up a quiz due to an absence… let me know Flip it over when you are finished and hang on to it.

6. EcoRegion Project Presentations Part of your grade will be based on your presentation and your attention during your classmates’ presentations. Hand me your rubric when you come up to present.

7. Ecology Peer Evaluations On the top left of your paper please PRINT all group members names (first & last) On the top right of your paper please PRINT your name Divide your paper into three sections (one section for each of your partners and one section for your self evaluation). Write your partner's names above one of the sections and your name above the last section) Answer these questions using COMPLETE SENTENCES about each partner in their section of your paper and about yourself in your section. 1. Did your partner complete their assigned section of your presentation? 2. Did your partner complete their assigned section on time? 3. Did your partner use their class time wisely? 4. Do you think your partner adequately explained their section? Why or why not? 5. Did your partner include video clips and diagrams or any additional material for their section? 6. What grade do you think your partner deserves AND WHY? **DO NOT let anyone see your evaluation. Bring your paper to me.

8. Evolution = Change over Time Lizard Activity Relay race 1 st person on the team comes up and draws the lizard as fast as they can. They flip the original lizard over and leave theirs face up. 2 nd person comes up once first person sits down and draws their lizard based on the first person’s drawing. 2 nd person flips first person’s lizard down and flips theirs up. 3 rd person comes up once second person sits down and they draw their lizard based on the second person’s drawing as fast at they can. They flip the second person’s lizard over and they leave their lizard face up.

9. Organic Chemistry ppt and foldable Lipids slides 25-33 Work on foldable

10. Amino Acid Sequence Activity Handout you picked up at the door.

11. EXIT TICKET 1.Please describe an organic compound 2.Please give an example of an organic compound found in the cell 3.Please describe the structure and function of carbohydrates.

12. Oral Conclusion 1.Please give an example of a limiting factor 2.Describe one way humans are impacting the nitrogen cycle 3.Describe one way humans are impacting the carbon cycle 4.How are microorganisms such as bacteria beneficial to an ecosystem? Organism? 5.Give an example of a producer. A consumer> 6.Describe biological magnification. 7.Give an example of an abiotic factor. A biotic factor. 8.Describe an invasive species and give an example. 9.Why does only 10% of the energy move from trophic level to trophic level? 10.How is primary succession different from secondary succession?

13. Launch Clean the floor around your desk, please throw away any garbage near your desk (yes PLEASE, even if it isn't yours) Words of Wisdom to launch you! “ If you think you can, or if you think you can't, you are right!” Henry Ford

14. Spirals Use Complete Sentences 9/22/15 AP BIO Discussion Questions Using your phone or textbook please answer the following: 1. Please explain how enzymes are able to function as catalysts. 2. Please explain why ATP is important and how its structure allows it to function as the currency of energy. allows it to function as the currency of energy.

15. Spirals Use Complete Sentences 9/24/15 AP BIO Discussion Questions Usi4ng your phone or textbook please answer the following: 1.Please describe fee6back inhibition (pg. 102 of green textbook)

16. Reminders Root Quiz 1-50 FRIDAY. I will be off campus Wednesday Biomolecules Research due test day, Mon 9- 28-15 Read chapters 2 AND 3 in your textbook and the Chemistry section in your Cliffsnotes Watch the Bozeman Biochemistry Podcasts Biochemistry exam is on Monday, 9-28-15

17. Excellent Study Tool http://www.bozemanscience.com/science- videos/

18. Termites

19. … take notes in here. … paper and ink

20. Check these often: Lost and Found Lost papers

21. Monitor your Grades!!! Make sure you are monitoring your grades via HAC/SAC

22. Absent?? Check the website

23. My Goals for YOU Develop a love and curiosity for biology because biology is amazing!! Pass the AP Biology College Board Exam with a 4 or 5 (saves you time and $$$$) Have fun this year while being challenged at the college level!

24. Why I chose to teach I believe: Life should be filled with love, joy, laughter, learning and fun! One way to have these things is to get a good education and great job. The reason we are here is to help one another have these things It is important to “pay it forward” and make a difference in someone else’s life otherwise, why are we here?!?

25. The New AP Biology Course and AP Biology Exam Teacher is facilitator. Very few Power Point notes from the teacher Learning is Inquiry Based Labs are Inquiry Based Students are given objectives to meet and master.

27. AP Biology Exam – Usually 2 nd Monday in May The tests will be graded under the direction of the College Board, with scores ranging from 1 to 5. Colleges generally grant credit for scores of 3, 4, or 5, but it is up to the discretion of the participating colleges. Any student wishing to receive college credit for this course MUST check with his or her prospective college NOW to determine what will be accepted for credit.

28. Exam Information The AP Biology Exam consists of two sections: multiple choice and free response. The exam is 3 hours long and includes both a 90-minute multiple choice section and a 90-minute free- response section that begins with a mandatory 10- minute reading period. The multiple-choice section accounts for half of the student’s exam grade, and the free-response section accounts for the other half.

29. Section I, Part A, consists of 63 multiple-choice questions Part B includes 6 grid-in questions that require the integration of science and mathematical skills. In Section II, students should use the mandatory reading period to read and review the questions and begin planning their responses. This section contains two types of free-response questions (short and long), and the student will have a total of 80 minutes to complete all of the questions. There will be 2 long Free Response and 6 short free response

30. College Board Objectives and Agenda for the Day College Board: General Topics and Concepts, Biochemistry Today's Agenda- You Be the Doc Lab In this unit we will: Study carbon Learn the important biological functional groups Study organic molecules (carbs, proteins, lipids, nucleic acids) and their monomers Protein Notes Exam: Monday the 28th over biochemistry (study Cliff Notes AND Chapters 2-3 in your textbook; Visit Bozeman Biology Podcasts)

31. Root Quiz 1-40 First and Last Name on a Sheet of Paper Period = 4 Date = 9/19/14 Number 1-20 straight down your paper You will just write the answer

32. Root Quiz 1-40 Just write the answer: 1.AB 11. Chondro 2.Carcin 12. Caudal 3.Carni 13. A,An 4.Coel 14. Cocco 5.Calori 15. Arthro 6.Cyto 16. Bi 7.Cephalo 17. Cranio 8.Cuti 18. Corp 9.Chemo 19. Crypt 10.Cost 20. Chromo

33. PreLab “You Be the Doc”

34. PPT Proteins???

35. Dehydration Synthesis Practice Everyone will start with a monosaccharide (the monomer of a polysaccharide/carbohydrate) Then you will create a disaccharide by dehydration synthesis (condensation reaction) with one partner at your table. You will have to demonstrate how a water molecule is formed in this reaction. After that, you will create a oligosaccharide by joining your disaccharide to your other partner’s disaccharide.. Once you have your oligosaccharide, you will join yours with a table near you creating a polysaccharide. Continue this until you have one large, long chain with everyone’s one your side of the room connected. Show it to me when it is done.

36. How Much Water is in a Carrot? I will put you in groups as usual Read the information regarding the lab on the handout Look at the materials on the cart Each day this week you will have 10-20 min. to work on this lab (except Wed). Some materials you will have to share. Write the materials needed and the detailed procedure you will use to extract the water. Everyone needs their own paper. Develop a hypothesis using an “if then” statement for the amount of water in the carrot and write it down. I need to approve it.

37. Proteins

38. Most structurally & functionally diverse group of biomolecules Functions: involved in almost everything enzymes structure (keratin, collagen) carriers & transport (membrane channels) receptors & binding (defense) contraction (actin & myosin) signaling (hormones) storage (bean seed proteins)

39. Proteins Structure: monomer = amino acids 20 different amino acids polymer = polypeptide protein can be 1 or more polypeptide chains folded & bonded together large & complex molecules complex 3-D shape

40. Amino acids  Structure:  central carbon  amino group  carboxyl group (acid)  R group (side chain)  variable group  confers unique chemical properties of the amino acid —N——N— H H H | —C— | C—OH || O R

41. Nonpolar amino acids  nonpolar & hydrophobic

42. Polar amino acids  polar or charged & hydrophilic

43. Sulfur containing amino acids Disulfide bridges cysteines form cross links

44. Building proteins Peptide bonds: dehydration synthesis linking NH 2 of 1 amino acid to COOH of another C–N bond peptide bond

45. Building proteins Polypeptide chains N-terminal = NH 2 end C-terminal = COOH end repeated sequence (N-C-C) is the polypeptide backbone grow in one direction

46. Protein structure & function hemoglobin function depends on structure 3-D structure twisted, folded, coiled into unique shape collagen pepsin

47. Protein structure & function function depends on structure all starts with the order of amino acids what determines that order of amino acids? lysozyme: enzyme in tears & mucus that kills bacteria the 10 glycolytic enzymes used to breakdown glucose to make ATP

48. Primary (1°) structure Order of amino acids in chain amino acid sequence determined by DNA slight change in amino acid sequence can affect protein’s structure & it’s function even just one amino acid change can make all the difference!

49. Primary (1°) structure: Sickle cell anemia

50. Secondary (2°) structure “Local folding” folding along short sections of polypeptide interaction between adjacent amino acids H bonds on backbone  -helix  -pleated sheet

51. Tertiary (3°) structure “Global (whole molecule) folding” determined by interactions between R groups anchored by disulfide bridges stabilized by hydrogen and ionic ‘bonds’ hydrophobic interactions effect of water in cell

52. 2° 3°

53. Quaternary (4°) structure Joins together more than 1 polypeptide chain only then is it a functional protein

54. Chaperonin proteins Guide protein folding provide shelter for folding polypeptides keep the new protein segregated from cytoplasmic influences

55. Protein models Protein structure visualized by X-ray crystallography extrapolating from amino acid sequence computer modelling lysozyme

56. Protein structure (review) R groups hydrophobic interactions, disulfide bridges, ionic bonds R groups hydrophobic interactions, disulfide bridges, ionic bonds 4° 1° 2° 3°

57. Denature a protein Disrupt 3° structure pH temperature salt unravel or denature protein disrupts H bonds, ionic bonds & disulfide bridges Some proteins can return to their functional shape after denaturation, many cannot! Think eggs… Once you cook ‘em, there is no going back!

58. Love them Proteins!

59. Functional Group and Function Card Sort Write each functional group on a separate notecard On different notecards write the name of the functional group. One name per card. And on another card write the description. Each functional group will have three cards. EX: A card with OH, A card with Hydroxyl Group and A card that says “formed when water dissociates or falls apart also found in the structure of alcohols. Because of the hydroxyl group alcohols are....... Once your cards are created…mix them up and quiz your partner(s)

60. The New AP Biology Course and AP Biology Exam Teacher is facilitator. Very few Power Point notes from the teacher Learning is Inquiry Based Labs are Inquiry Based Students are given objectives to meet and master.

62. AP Biology Exam – Usually 2 nd Monday in May The tests will be graded under the direction of the College Board, with scores ranging from 1 to 5. Colleges generally grant credit for scores of 3, 4, or 5, but it is up to the discretion of the participating colleges. Any student wishing to receive college credit for this course MUST check with his or her prospective college NOW to determine what will be accepted for credit.

63. Exam Information The AP Biology Exam consists of two sections: multiple choice and free response. The exam is 3 hours long and includes both a 90-minute multiple choice section and a 90-minute free- response section that begins with a mandatory 10- minute reading period. The multiple-choice section accounts for half of the student’s exam grade, and the free-response section accounts for the other half.

64. Section I, Part A, consists of 63 multiple-choice questions Part B includes 6 grid-in questions that require the integration of science and mathematical skills. In Section II, students should use the mandatory reading period to read and review the questions and begin planning their responses. This section contains two types of free-response questions (short and long), and the student will have a total of 80 minutes to complete all of the questions. There will be 2 long Free Response and 6 short free response

65. 9/23/14 **check the floor around your area and throw away any trash **please put textbooks back on the bookshelf planet earth water 1. Name two functions of carbohydrates. 2. Predict what monomer you would form if you broke a carbohydrate down by hydrolysis. 3. Explain what would result if a lipid were hyrolyzed inside of an intestinal cell. 4. Why is cholesterol important?

66. **check the floor around your area and throw away any trash **please put textbooks back on the bookshelf planet earth water 1. Name two functions of carbohydrates. 2. Predict what monomer you would form if you broke a carbohydrate down by hydrolysis. 3. Explain what would result if a lipid were hyrolyzed inside of an intestinal cell. 4. Why is cholesterol important?

67. **check the floor around your area and throw away any trash **please put textbooks back on the bookshelf planet earth water 1. Name two functions of carbohydrates. 2. Predict what monomer you would form if you broke a carbohydrate down by hydrolysis.

68. **check the floor around your area and throw away any trash **please put textbooks back on the bookshelf planet earth water 1. Predict what monomer would be produced if the protein collagen is broken down. 2. Are lipids technically made of monomers? Why or why not?

69. **check the floor around your area and throw away any trash **please put textbooks back on the bookshelf planet earth water 1. Predict what monomer would be produced if the protein collagen is broken down. 2. Are lipids technically made of monomers? Why or why not?

70. **check the floor around your area and throw away any trash **please put textbooks back on the bookshelf planet earth water 1. Please name two biologically important polymers. 2. Please explain how monomers are joined together to form polymers. 3. How are hydrolysis and dehydration synthesis related?

71. EXIT TICKET 1. Give an example of a medicine that can behave differently in the cell/body in its isomer form. 2. Give an example of imbibition from the water lab. 3. Name and draw one acidic functional group. **use complete sentences to answer these questions and hand it to me as you exit the classroom **check the floor around your area and throw away any trash planet earth water planet earth water

72. EXIT TICKET 1. Please explain how hydrogen bonding enables water to move by capillary action. 2. Please explain how hydrogen bonding allows water to have a high specific heat capacity. 3. Please explain why we say water is a “heat sink” 4. Please describe one property of carbon that allows it to be so versatile. **use complete sentences to answer these questions and hand it to me as you exit the classroom **check the floor around your area and throw away any trash planet earth water planet earth water

73. EXIT TICKET 1. Please give an example of an ionic compound. 2. What are two unique properties of water that are a result of hydrogen bonding? **use complete sentences to answer these questions and hand it to me as you exit the classroom **check the floor around your area and throw away any trash planet earth water planet earth water

74. EXIT TICKET 1.Compare and Contrast taxis and kinesis. 2.Please compare and contrast an ionic and covalent bond 3.Please describe as many of the chemical properties of water as you can.

75. Launch Clean the floor around your desk, please throw away any garbage near your desk (yes PLEASE, even if it isn't yours) Words of Wisdom to launch you! “ If you think you can, or if you think you can't, you are right!” Henry Ford

76. What a Beautiful World http://www.youtube.com/watch?v=I_ZvZQT8 1OY ~2 min