1. Main Slides from Week 2 of 3: Intensive Course in Research Writing Barbara Gastel, MD, MPH Texas A&M University Summer 2012

2. Some Major Topics in This Set of Slides Writing the introduction Some aspects of writing style Ethical and other issues Writing an abstract Publishing a paper (Note: This week also included presentations by class members. The presentations were excellent. My congratulations to the presenters!)

3. Note: To keep the file small, photos have been deleted from this set of slides.

4. Intensive Course in Research Writing: Session 6 (2 July 2012)

5. Today Presentations by some class members about their work –Note: After each presentation, please complete the feedback form. Thank you! Presentation/discussion: writing the introduction Discussion: some aspects of writing style Workshop: draft of discussion; ideas for introduction

6. The Introduction

7. Purposes of the Introduction To provide background –In order to help readers understand the paper –In order to help readers appreciate the importance of the research To identify the question(s) the research addressed –Sometimes stated as a hypothesis or hypotheses

8. Length of Introduction Articles in biomedical journals: tend to have short introductions (a few paragraphs or less) Articles in some other journals: tend to have long introductions What about introductions in your field?

9. Gearing the Introduction to the Audience Papers in relatively general journals: Introduction must provide basic background information. Papers in specialized journals in your field: Introduction can assume that readers have more knowledge about the field.

10. Structure of the Introduction Introduction typically should be funnel- shaped, moving from general to specific A common structure: –Information on importance of topic –Highlights of relevant previous research –Identification of unanswered question(s) –Approach you used to seek the answer(s) –(In some fields) your main findings

11. IMRAD Structure: Like an Hourglass Introduction: starts by talking broadly about your topic and then narrows down to your own research Methods: narrow—focuses on your research Results: narrow—focuses on your research Discussion: starts narrow (with your own research) and then broadens to discuss others’ research and then wider implications

12. Mini-Exercise on Introductions Look at a set of instructions to authors that you obtained. –What, if anything, does it say about the introduction? Look at the introduction section of the paper you are using as a model. –How long is it? –What types of content does it include? –How is it organized? –What are some phrases in it that might be useful in introductions that you write?

13. Some Aspects of Writing Style

14. Small-Group Discussion: Chapter 30 What are the most important things you learned from the chapter? (Please be specific.) What questions do you have about the chapter?

15. Some Main Items in Chapter 30 Simplicity Misuse of words Tense in scientific writing Active versus passive voice Numbers

16. Homework for Tomorrow Reading: Chapters 5, 31, 32, and 33 in textbook; Appendix 2 in textbook Writing due: –Revised draft of discussion –Draft of introduction

17. Workshop: Draft of Discussion; Ideas for Introduction Read the drafts of your fellow group members’ discussions. Note strengths and make suggestions. Discuss with your fellow group members the plans for your introduction.

18. Wishing you a good afternoon!

19. Intensive Course in Research Writing: Session 7 (3 July 2012)

20. Today Presentations by some class members about their work Discussion: some aspects of writing style A little editing practice Presentation/discussion: some ethical and other issues Workshop: revised draft of discussion; draft of introduction

21. Some Aspects of Writing Style

22. Small-Group Discussion: Chapters 31–33 For this discussion, please meet with some people other than your usual small group. Questions –What are the most important things you learned from these chapters? (Please be specific.) –What questions do you have about these chapters?

23. Exercise: Using Simpler Words attempt→ currently→ demonstrate→ fundamental→ numerous→ subsequently→ utilize→

24. Exercise: Deleting Needless Words in the field of physics green in color is a very rare event to show whether or not it works of an efficient nature count the number of cells completely destroy

25. Exercise: Condensing Wordy Phrases at high speed→ at some future time→ for this reason→ in most instances→ in the event that→ the majority of→ is able to→

26. Exercise: Using Verbs, Not Nouns Made from Them have effects on→ make contributions→ produce relief of→ provide help to→ delivered a lecture→ There is a wide variation in mortality.→ It is my belief that→

27. Ethical and Other Issues in Journal Publication

28. Overview Authenticity and accuracy Originality Credit Ethical treatment of humans and animals Conflict of interest Resources

29. Authenticity and Accuracy Authenticity (not fabrication) Accuracy –Providing complete data (not only those supporting one’s hypothesis) –Avoiding inappropriate manipulation of images –Using appropriate statistical procedures

30. Originality Not republishing the same findings (except under special circumstances, with the original source cited) Not submitting the same manuscript to two or more journals at once Not dividing one small research project into many tiny papers (“salami science” or “cucumber science”)

31. Credit Citing sources of information and ideas (also aids credibility, helps in finding out more) Avoiding excessive use of others’ words –Recording sources when copying items or taking notes –Placing in quotation marks, or indenting, items used verbatim –Perhaps drafting some items while not looking at the source materials –Observing copyright and obtaining needed permissions

32. Ethical Treatment of Humans and Animals Treatment must conform to accepted international standards. Manuscript must document that the study was approved by an ethical review board before it was done. Note: Research on humans tends to be broadly defined, for example to include survey research.

33. Conflicts of Interest Can involve authors, peer reviewers, or editors Can be financial, ideological, or other May be required to report to the journal May be noted in the journal

34. A Resource on Ethics On Being a Scientist: Responsible Conduct in Research, 3rd ed (2009) From the US National Academies Largely for graduate students Available at www.nap.edu/catalog.ph p?record_id=12192 www.nap.edu/catalog.ph p?record_id=12192 Video available at site

35. Another Resource on Ethics –CSE’s White Paper on Promoting Integrity in Scientific Journal Publications, 2012 update –From the Council of Science Editors –Available at http://www.councilscienc eeditors.org/i4a/pages/in dex.cfm?pageid=3313 http://www.councilscienc eeditors.org/i4a/pages/in dex.cfm?pageid=3313

36. Some Other Resources Committee on Publication Ethics (COPE): http://publicationethics.org http://publicationethics.org World Association of Medical Editors (WAME): http://www.wame.orghttp://www.wame.org

37. Homework for Thursday Reading: Chapters 19, 20, 21, and 22 in textbook Writing due: Revised draft of introduction Looking ahead –Due Friday: draft of abstract –Due Monday: revised draft of at least part of your paper

38. Summarize for your group members the changes you made in your discussion. Read your group members’ introductions fairly quickly, to get the general meaning. Read the introductions more carefully, and write comments on it. Discuss each introduction, noting strengths and then providing suggestions. Give the commented-on introductions to the authors. Workshop: Revised Draft of Discussion; Draft of Introduction

39. Wishing you a good afternoon! 39

40. Note In the United States, July 4 is Independence Day. Therefore on Wednesday, July 4, the university was closed and the intensive course did not meet.

41. Intensive Course in Research Writing: Session 8 (5 July 2012)

42. Today Presentations by some class members Presentation/discussion: ethical and other issues Presentation/discussion: writing an abstract Presentation/discussion: publishing a paper (may continue tomorrow)

43. Ethical and Other Issues in Journal Publication (from last time)

44. The Abstract First to Be Read but Last to Be Revised

45. The Abstract As noted, briefly summarizes the paper Gives editors and peer reviewers their first impression of the paper Tends to be widely read Should be organized like the paper (for example, in sort of a mini-IMRAD format) Some journals have structured abstracts (with standardized headings)

46. The Abstract (cont) Depending on the kind of paper and the journal, can be informative (summarizing the content of the paper) or just indicative (stating the topics included) Should be carefully revised before the paper is submitted Be sure the content is consistent with that in the body of the paper.

47. PresentationPresentation (in absentia) on Abstracts Susan Aiello, DVM (guest instructor at last year’s intensive course)

48. Publishing a Paper

49. Submitting the paper The journal’s decision process Revising a paper Final steps

50. Submitting the Paper Traditional submission (by mail)—now rare Electronic submission –Via a journal website –As one or more e-mail attachments Inclusion of a cover letter (conventional or electronic) Completion of required forms—for example, regarding conflict of interest

51. Cover Letter: Some Possible Content Title and author(s) of paper Type of submission (or section of journal) Fact that paper is new and not being submitted elsewhere Sometimes: –Where paper has been presented orally –Why the paper is important –Some possible peer reviewers

52. Cover Letters: Some Notes Some journals post sample cover letters online. Some journals have electronic “fill-in-the- blank” cover letters.

53. Mini-Workshop: Submitting a Paper Look at your sets of instructions to authors. What, if anything, do they say about the following? –How to submit a paper –What to include in the cover letter –What forms, if any, to submit with the paper –Other aspects of submitting a paper

54. Some Categories of Editors at Journals Helpful to know because you might interact with each Main categories: –Editor-in-chief (and sometimes associate editors etc)—concerned mainly with content –Managing editor(s)—concerned mainly with administration of the journal –Manuscript editor(s)—also called copyeditors—improve the writing and maintain a consistent style

55. Initial Screening by the Journal For appropriateness of subject matter For compliance with instructions For overall quality (sometimes)

56. Peer Review Evaluation by fellow experts in the field Purposes –To help the editor decide whether to publish the paper –To help the authors improve the paper, whether or not the journal accepts it Discussion questions: –What are some advantages of peer review? –What are some possible drawbacks?

57. Some Items Peer Reviewers Tend to Be Asked to Evaluate Importance of the research question Originality of the research Timeliness of the topic Appropriateness of the methods Soundness of the conclusions Completeness of the content Quality of tables and figures General quality of the writing

58. Mini-Workshop: Peer Review Did you ever receive peer reviews of a paper you wrote? If so: –What did you like about the peer reviews? –What didn’t you like about them? Have you been a peer reviewer? If so: –What did you like about the experience? –What didn’t you like about it?

59. The Editor’s Decision Based on the peer reviewers’ advice, the editor’s own evaluation, the amount of space in the journal, other factors Options: –Accept as is (rare) –Accept if suitably revised –Reconsider if revised –Reject

60. Revising a Paper Revise and resubmit promptly. Indicate what revisions were made. –Include a letter noting the revisions. If you received a list of requested revisions, address each in the letter. –If requested, show revisions in Track Changes. If you disagree with a requested revision, explain why in your letter. Try to find a different way to solve the problem that the editor or reviewer identified.

61. Answering Queries Queries: questions from the manuscript editor Some topics of queries: –Inconsistencies –Missing information –Ambiguities –Other Advice: Respond promptly, politely, and completely yet concisely.

62. Reviewing Proofs Proof: copy of typeset material to check Commonly provided as a PDF file Must be reviewed promptly; therefore: –If your e-mail address changes, be sure to inform the journal. –If you won’t be reachable, arrange to have someone review the proofs for you.

63. Reviewing Proofs (cont) Some things to check: –Completeness (presence of all components) –Absence of typographical errors in text and references –Placement of figures and tables –Quality of reproduction of figures Note: This is not the time to rewrite the paper.

64. Scenario to Consider Your paper has been accepted and copyedited. Shortly before the proofs are scheduled to arrive, someone publishes a paper that would be extremely appropriate to cite. What, if anything, do you do?

65. A final step: Celebrate publication of your paper!

66. Homework for Tomorrow Reading: Chapters 36 and 37 in textbook; also review Chapter 9 Browsing: annotated grant proposal (see syllabus; also being e-mailed) Writing due: draft of abstract

67. Wishing you a good afternoon! 67

68. Intensive Course in Research Writing: Session 9 (6 July 2012)

69. Today Presentations by some class members Presentation/discussion: ethical and other issues Presentation/discussion: publishing a paper Administrative items (academic and non- academic)

70. Ethical and Other Issues in Journal Publication (from before)

71. Publishing a Paper (from before)

72. Administrative Items (Academic) For Monday: –Reading: Chapters 23 and 25 –Browsing: review articles (look at 3; bring at least 1) –Writing: Revised draft of part of your paper Note: Draft CV won’t be due until Tuesday.

73. Wishing you a good weekend! 73