1. Introduction to Computer Systems Topics: Theme Five great realities of computer systems How this fits within CS curriculum Logistics intro.ppt CS 105 “Tour of the Black Holes of Computing” “Mike” Michael A. Erlinger

2. – 2 – CS 105 Course Theme Abstraction is good, but don’t forget reality! Many CS Courses emphasize abstraction Abstract data types Asymptotic analysis These abstractions have limits Especially in the presence of bugs Need to understand underlying implementations Useful outcomes Become more effective programmers Able to find and eliminate bugs efficiently Able to tune program performance Prepare for later “systems” classes in CS or CE Compilers, Operating Systems, Networks, Computer Architecture, Robotics, etc.

3. – 3 – CS 105 Textbooks Randal E. Bryant and David R. O’Hallaron, “Computer Systems: A Programmer’s Perspective”, Second Edition, Prentice Hall 2010 Brian Kernighan and Dennis Ritchie, “The C Programming Language, Second Edition”, Prentice Hall, 1988 Larry Miller and Alex Quilici The Joy of C, Wiley, 1997

4. – 4 – CS 105 Syllabus Syllabus on Web Calendar defines due dates: Everything is linked off the Calendar Labs – cs grading system used to hold grades, many have specific grading system (individual grades will be moved over)

5. – 5 – CS 105 Course Components Lectures Higher level concepts Problems – Quizzes & Class Applied concepts, important tools and skills for labs, clarification of lectures, exam coverageLabs The heart of the course 1 or 2 weeks Provide in-depth understanding of an aspect of systems Programming and measurement Time to learn, avoid time to optimize Teams of two, one must know pointers

6. – 6 – CS 105 Notes: Work groups You must work in pairs on all labs Honor-code violation to work without your partner!Handins Check Calendar. Electronic submissions only. Grading Characteristics Lab scores tend to be high Serious handicap if you do not finish a lab Tests/Quizzes typically have a wider range of scores They are primary determinant of your grade… but not only one! Do your share of lab work and prepare for quizzes or bomb the test!!

7. – 7 – CS 105 Cheating What is cheating? Sharing code: either by copying (web search, etc), retyping, looking at, or supplying a copy of a file. What is NOT cheating? Helping others use systems or tools. Helping others with high-level design issues. Helping others debug their code.

8. – 8 – CS 105 Facilities Assignments will use Intel computer systems Not all machines are created alike Even Intel Macs aren’t necessarily compatible Knuth is a 64-bit server Wilkes: x86/Linux specifically set up for this class Login on a Mac, then ssh to Wilkes If you want fancy programs, start X11 first Directories are cross-mounted, so you can edit on Knuth or your Mac, and Wilkes will see your files …or ssh into Wilkes from your dorm All programs must run on Wilkes: that’s where we grade

9. – 9 – CS 105 Overview: Programs and Data Topics Bit operations, arithmetic, assembly language programs, representation of C control and data structures Includes aspects of computer architecture and compilers Data objects are distinguished by context 100011 = 35 or ‘#’Assignments L1: Manipulating bits L2: Defusing a binary bomb L3: Hacking a buffer bomb

10. – 10 – CS 105 Overview: Performance Topics High level processor models, code optimization (control and data), measuring time on a computer Includes aspects of architecture, compilers, and OS Easier and cheaper to make Processors run faster than to make Memory run faster: Processor-Memory GapAssignments L5: Optimizing Code Performance

11. – 11 – CS 105 Overview: The Memory Hierarchy, Caching, VM, Disks Topics Memory technology, memory hierarchy, caches, disks, locality Virtual memory, address translation, dynamic storage allocation. Exploit caches for performance or ignore and run slowly..Assignments L5: Optimizing Code Performance Malloc Lab – not done

12. – 12 – CS 105 Overview: Linking and Exceptions Topics - Overview Object files, static and dynamic linking, libraries, loading Hardware exceptions, Unix signals, nonlocal jumps Includes aspects of compilers, OS, and architecture Programs: source – machine language – executable object codeAssignments Shell lab, web lab – usually not done

13. – 13 – CS 105 Overview: Processes and Concurrency Topics Process creation, process hierarchy, shared memory between processes Process == OS’s abstraction for a running program Semaphores, critical sections Threads Concurrent processes, context switchingAssignments L6: Ring Buffer Parent and Child process management Shared memory between processes Use of Threads Fork based Ring Buffer

14. – 14 – CS 105 Overview: I/O, Networking Topics High level and low-level I/O, network programming, Internet services, Web servers Includes aspects of networking, OS, and architecture.Assignments L7: Socket lab

15. – 15 – CS 105 Lab Rationale Each lab should have a well-defined goal such as solving a puzzle or winning a contest. Defusing a binary bomb. Winning a performance contest. Doing a lab should result in new skills and concepts Data Lab: computer arithmetic, digital logic. Bomb Labs: assembly language, using a debugger, understanding the stack Performance Lab: profiling, measurement, performance debugging. Process Lab: Interprocess communication. Sockets Lab: Intercomputer communication We try to use competition in a fun and healthy way. Set a threshhold for full credit. Post intermediate results (anonymized) on Web page for glory! Most points for doing it correctly

16. – 16 – CS 105 Good Luck!

17. – 17 – CS 105 Great Reality #1 Int’s are not Integers, Float’s are not Reals !! Examples Is x 2 ≥ 0? Float’s: Yes! Int’s: » 40000 * 40000 --> 1600000000 » 50000 * 50000 --> ??? Is (x + y) + z = x + (y + z)? Unsigned & Signed Int’s: Yes! Float’s: » (1e20 + -1e20) + 3.14 --> 3.14 » 1e20 + (-1e20 + 3.14) --> ??

18. – 18 – CS 105 Computer Arithmetic Does not generate random values Arithmetic operations have important mathematical properties…BUT Cannot assume “usual” properties Due to finiteness of representations--??? Integer operations satisfy “ring” properties Commutativity, associativity, distributivity Floating point operations satisfy “ordering” properties Monotonicity, values of signsObservation Need to understand which abstractions apply in which contexts Important issues for compiler writers and serious application programmers

19. – 19 – CS 105 Great Reality #2 You’ve got to know assembly Chances are, you’ll never program in assembly…C Compilers are much better & more patient than you are Understanding assembly key to machine-level execution model Behavior of programs in presence of bugs High-level language model breaks down Tuning program performance Understanding sources of program inefficiency Implementing system software Compiler has machine code as target Operating systems must manage process state Creating/Fighting malware X86 is the architecture of choice

20. – 20 – CS 105 Assembly Code Example Time Stamp Counter Special 64-bit register in Intel-compatible machines Incremented every clock cycle Read with rdtsc instructionApplication Measure time required by procedure In units of clock cycles…NOT instructions double t; start_counter(); ---need to access reg P(); t = get_counter(); ---need to access reg printf("P required %f clock cycles\n", t);

21. – 21 – CS 105 Code to Read Counter Write small amount of assembly code using GCC’s asm facility Inserts assembly code into machine code generated by compiler static unsigned cyc_hi = 0; static unsigned cyc_lo = 0; /* Set *hi and *lo to the high and low order bits of the cycle counter. */ void access_counter(unsigned *hi, unsigned *lo) { asm("rdtsc; movl %edx,%0; movl %eax,%1" : "=r" (*hi), "=r" (*lo) : : "%edx", "%eax"); }

22. – 22 – CS 105 Code to Read Counter /* Record the current value of the cycle counter. */ void start_counter() { access_counter(&cyc_hi, &cyc_lo); } /* Number of cycles since the last call to start_counter. */ double get_counter() { unsigned ncyc_hi, ncyc_lo; unsigned hi, lo, borrow; /* Get cycle counter */ access_counter(&ncyc_hi, &ncyc_lo); /* Do double precision subtraction */ lo = ncyc_lo - cyc_lo; borrow = lo > ncyc_lo; hi = ncyc_hi - cyc_hi - borrow; return (double) hi * (1 << 30) * 4 + lo; }

23. – 23 – CS 105 Measuring Performance Trickier than it Might Look Many sources of variation Example – cycles per element, rather than time Sum integers from 1 to n nCyclesCycles/n 1009619.61 1,0008,4078.41 1,0008,4268.43 10,00082,8618.29 10,00082,8768.29 1,000,0008,419,9078.42 1,000,0008,425,1818.43 1,000,000,0008,371,2305,5918.37

24. – 24 – CS 105 Great Reality #3 Memory Matters Memory is not unbounded It must be allocated and managed Many applications are memory dominated Memory referencing bugs especially pernicious Effects are distant in both time and space - SegFault Memory performance is not uniform Cache and virtual memory effects can greatly affect program performance Adapting program to characteristics of memory system can lead to major speed improvements

25. – 25 – CS 105 Memory Referencing Bug Example main () { long int a[2]; double d = 3.14; a[2] = 1073741824; /* Out of bounds reference */ printf("d = %.15g\n", d); // float in scientific notation exit(0); } main () { long int a[2]; double d = 3.14; a[2] = 1073741824; /* Out of bounds reference */ printf("d = %.15g\n", d); // float in scientific notation exit(0); } AlphaMIPSLinux -g5.30498947741318e-3153.13999986648563.14 -O3.14 (Linux version gives correct result, but implementing as separate function gives segmentation fault.) – storage allocation issue

26. – 26 – CS 105 Memory Referencing Errors C and C++ do not provide any memory protection Out of bounds array references Invalid pointer values Abuses of malloc/free Can lead to nasty bugs Whether or not bug has any effect depends on system and compiler Action at a distance Corrupted object logically unrelated to one being accessed Effect of bug may be first observed long after it is generated How can I deal with this? Program in Java, Lisp, or ML Understand what possible interactions may occur Use or develop tools to detect referencing errors

27. – 27 – CS 105 Memory System Performance Example Hierarchical memory organization Performance depends on access patterns Including how step through multi-dimensional array Order of elements matters ??? void copyji(int src[2048][2048], int dst[2048][2048]) { int i,j; for (j = 0; j < 2048; j++) for (i = 0; i < 2048; i++) dst[i][j] = src[i][j]; } void copyij(int src[2048][2048], int dst[2048][2048]) { int i,j; for (i = 0; i < 2048; i++) for (j = 0; j < 2048; j++) dst[i][j] = src[i][j]; } 21 times slower (Pentium 4)

28. – 28 – CS 105 The Memory Mountain 0 200 400 600 800 1000 1200 Read throughput (MB/s) Stride (words) Working set size (bytes), ??? Pentium III Xeon 550 MHz 16 KB on-chip L1 d-cache 16 KB on-chip L1 i-cache 512 KB off-chip unified L2 cache L1 L2 Mem Live in L1, very fast

29. – 29 – CS 105 Great Reality #4 There’s more to performance than asymptotic complexity !!! Constant factors matter too! Easily see 10:1 performance range depending on how code written Must optimize at multiple levels: algorithm, data representations, procedures, and loops Must understand system to optimize performance How programs compiled and executed How to measure program performance and identify bottlenecks How to improve performance without destroying code modularity and generality

30. – 30 – CS 105 Example Matrix Multiplication Standard desktop computer, vendor compiler, using optimization flags Both implementations have exactly the same operations count (2n 3 ) What is going on ? 160x Triple loop Best code (K. Goto)

31. – 31 – CS 105 MMM Plot: Analysis Memory hierarchy and other optimizations: 20x Vector instructions: 4x Multiple threads: 4x Reason for 20x: Blocking or tiling, loop unrolling, array scalarization, instruction scheduling, search to find best choice Effect: less register spills, less L1/L2 cache misses, less TLB misses

32. – 32 – CS 105 Great Reality #5 Computers do more than execute programs They need to get data in and out I/O system critical to program reliability and performance They communicate with each other over networks Many system-level issues arise in presence of network Concurrent operations by autonomous processes Coping with unreliable media Cross platform compatibility Complex performance issues

33. – 33 – CS 105 Role within Curriculum Transition from Abstract to Concrete! From: high-level language model To: underlying implementation CS 70 C++ & Structures CS 105 Systems CS 124 Operating Systems CS 132 Compilers Processes Mem. Mgmt Machine Code Optimization Data Structures Applications Programming CS 125 Networks Network Protocols CS 156 Parallel CS 136 Advanced Arch Exec. Model Memory System CS 60 Principles of CS

34. – 34 – CS 105 Course Perspective Most Systems Courses are Builder-Centric Computer Architecture Design pipelined processor in Verilog Operating Systems Implement large portions of operating system Compilers Write compiler for simple language Networking Implement and simulate network protocols

35. – 35 – CS 105 Course Perspective (Cont.) This Course is Programmer-Centric Purpose is to show how, by knowing more about the underlying system, one can be more effective as a programmer Enable you to Write programs that are more reliable and efficient Incorporate features that require hooks into OS »E.g., concurrency, signal handlers Not just a course for dedicated hackers We bring out the hidden hacker in everyone Cover material that you will not see elsewhere

36. – 36 – CS 105 The End

37. – 37 – CS 105 Memory Performance Example Implementations of Matrix Multiplication Multiple ways to nest loops /* ijk */ for (i=0; i<n; i++) { for (j=0; j<n; j++) { sum = 0.0; for (k=0; k<n; k++) sum += a[i][k] * b[k][j]; c[i][j] = sum; } /* ijk */ for (i=0; i<n; i++) { for (j=0; j<n; j++) { sum = 0.0; for (k=0; k<n; k++) sum += a[i][k] * b[k][j]; c[i][j] = sum; } /* jik */ for (j=0; j<n; j++) { for (i=0; i<n; i++) { sum = 0.0; for (k=0; k<n; k++) sum += a[i][k] * b[k][j]; c[i][j] = sum } /* jik */ for (j=0; j<n; j++) { for (i=0; i<n; i++) { sum = 0.0; for (k=0; k<n; k++) sum += a[i][k] * b[k][j]; c[i][j] = sum }

38. – 38 – CS 105 jki kij kji Matmult Performance (Alpha 21164) Too big for L1 CacheToo big for L2 Cache

39. – 39 – CS 105 Blocked matmult perf (Alpha 21164) 0 20 40 60 80 100 120 140 160 5075100125150175200225250275300325350375400425450475500 matrix size (n) bijk bikj ijk ikj