Presentation is loading. Please wait.

Presentation is loading. Please wait.

NML Bioinformatics Service— Licensed Bioinformatics Tools High-throughput Data Analysis Literature Study Data Mining Functional Genomics Analysis Vector.

Published byLynne Ford Modified over 8 years ago

Similar presentations

Presentation on theme: "NML Bioinformatics Service— Licensed Bioinformatics Tools High-throughput Data Analysis Literature Study Data Mining Functional Genomics Analysis Vector."— Presentation transcript:

1 NML Bioinformatics Service— Licensed Bioinformatics Tools High-throughput Data Analysis Literature Study Data Mining Functional Genomics Analysis Vector NTI Advance®

2 SoftwareLicense type License number 2008200920102011201220132014 GalaxyOpen AccessUnlimited 1524 Partek FlowAnnual/Floating6 4268 NextbioAnnual/SiteUnlimited 230278318333 BIOBASEAnnual/SiteUnlimited 154226289316 Oncomine*Annual/Named1 40535663 Golden Helix SVS 7**Annual/Floating1 71824 GenevestigatorAnnual/Named10 17192128 Partek Genomics SuiteAnnual/Floating26178101137165204225 Ingenuity Pathway AnalysisAnnual/Floating3102131243308401498553 Vector NTI AdvancePerpetual/Floating2 33677988103115 Total Annual Registered Users 163242411972124815701725 * Oncomine was downsized to 2 named users starting FY2014, user growth in 2014 represent the number of consultation requests ** Golden Helix SVS 7 was downsized from 1 floating license to 1 fixed license starting FY2014 and discontinued in FY2015 Cumulative Annual Registered Users of NML Licensed Commercial Bioinformatics Resources

3 $65,000 $1,870,000 Centralized Licensing Model Delivers Dramatic Cost Saving

4 Average monthly sessions = 314 Average monthly hours = 323 hr Ingenuity Pathway Analysis Usage @ USC (Jan. 2012-Dec.2014)

5 Average monthly denied sessions = 117 Ingenuity Pathway Analysis Monthly Denied Sessions (Jan. 2013-Nov. 2014)

6 Bioinformatics Computing Resources at Norris Medical Library Computer Workstations in Norris Medical Library Hardware: Four Dell Precision T3550/T3660 workstations with 6-core Intel Xeon processors, 24- 32GB memory Software: Partek Flow, Galaxy, Cistrome, annovar R& Bioconductor, CAP-miRSeq Total Storage: 62 TB (May 2015) Custom Computing Cluster in USC High- Performance Computing Hardware: One head node and 9 worker nodes*. Each with dual processor 6/8-core AMD Opteron 6176 or Intel E5-2650, 48-64 GB memory. Software: Partek Flow, Galaxy, Cistrome, R& Bioconductor Total Storage: 4 TB You HPC file system File transfer Log on HPC HPC-NML custom condo Submit jobs HPC-NML head node

7 2014 Next Generation Sequencing (NGS) Data Analysis at NML Bioinformatics Service Galaxy FromTo# Users# Projects# Data Files Total Raw File Size (GB) Estimated Run Time (day) 1/1/201412/31/2014103033845438 Partek Flow FromTo# Users# Projects# Data Files Total Raw File Size (GB) Total Run Time (day) 1/1/201412/31/2014 4623626089901549.5

8 NGS Growth in Biomedical Research

9 Computing Storage Growth at NML Bioinformatics Service

Download ppt "NML Bioinformatics Service— Licensed Bioinformatics Tools High-throughput Data Analysis Literature Study Data Mining Functional Genomics Analysis Vector."

Similar presentations

SCARF Duncan Tooke RAL HPCSG. Overview What is SCARF? Hardware & OS Management Software Users Future.

SCARF Duncan Tooke RAL HPCSG. Overview What is SCARF? Hardware & OS Management Software Users Future.
Statewide IT Conference30-September-2011 HPC Cloud Penguin on David Hancock –

Statewide IT Conference30-September-2011 HPC Cloud Penguin on David Hancock –
Publishing applications on the web via the Easa Portal and integrating the Sun Grid Engine Publishing applications on the web via the Easa Portal and integrating.

Publishing applications on the web via the Easa Portal and integrating the Sun Grid Engine Publishing applications on the web via the Easa Portal and integrating.
GCC Genomics Core Computing. Current situation GCC 1.0 Roche 454 Current cluster UZ network 8C 16Gb 2TB UZ NAS Storage 8C 16Gb Per run: ~ 1 Mio reads.

GCC Genomics Core Computing. Current situation GCC 1.0 Roche 454 Current cluster UZ network 8C 16Gb 2TB UZ NAS Storage 8C 16Gb Per run: ~ 1 Mio reads.
Presented by: Yash Gurung, ICFAI UNIVERSITY.Sikkim BUILDING of 3 R'sCLUSTER PARALLEL COMPUTER.

Presented by: Yash Gurung, ICFAI UNIVERSITY.Sikkim BUILDING of 3 R'sCLUSTER PARALLEL COMPUTER.
Dawei Lin, Ph.D. Director, Bioinformatics Core UC Davis Genome Center July 20, 2008, SLIMS (Solexa sequencing.

Dawei Lin, Ph.D. Director, Bioinformatics Core UC Davis Genome Center July 20, 2008, SLIMS (Solexa sequencing.
World’s Leading Provider of Turn-key Compute Solutions for NGS / Bioinformatics.

World’s Leading Provider of Turn-key Compute Solutions for NGS / Bioinformatics.
SUMS Storage Requirement 250 TB fixed disk cache 130 TB annual increment for permanently on- line data 100 TB work area (not controlled by SUMS) 2 PB near-line.

SUMS Storage Requirement 250 TB fixed disk cache 130 TB annual increment for permanently on- line data 100 TB work area (not controlled by SUMS) 2 PB near-line.
Computing Resources Joachim Wagner 2008-07-24. Overview CNGL Cluster MT Group Cluster School Cluster Desktop PCs.

Computing Resources Joachim Wagner Overview CNGL Cluster MT Group Cluster School Cluster Desktop PCs.
Lunarc history 1986 - 1988 IBM 3090 150/VF 1988 - 1991 IBM 3090 170S/VF 1991 - 1997 Workstations, IBM RS/6000 1994 – 1997 IBM SP2, 8 processors. 1998 Origin.

Lunarc history IBM /VF IBM S/VF Workstations, IBM RS/ – 1997 IBM SP2, 8 processors Origin.
UK -Tomato Chromosome Four Sarah Butcher Bioinformatics Support Service Centre For Bioinformatics Imperial College London

UK -Tomato Chromosome Four Sarah Butcher Bioinformatics Support Service Centre For Bioinformatics Imperial College London
High Performance Computing (HPC) at Center for Information Communication and Technology in UTM.

High Performance Computing (HPC) at Center for Information Communication and Technology in UTM.
The ‘omics Data Tsunami » Non-stop revolution of high-throughput technology fuels unprecedented growth of ‘omics data » Researchers struggling with the.

The ‘omics Data Tsunami » Non-stop revolution of high-throughput technology fuels unprecedented growth of ‘omics data » Researchers struggling with the.
Parallel Data Analysis from Multicore to Cloudy Grids Indiana University Geoffrey Fox, Xiaohong Qiu, Scott Beason, Seung-Hee.

Parallel Data Analysis from Multicore to Cloudy Grids Indiana University Geoffrey Fox, Xiaohong Qiu, Scott Beason, Seung-Hee.
The University of Texas Research Data Repository : “Corral” A Geographically Replicated Repository for Research Data Chris Jordan.

The University of Texas Research Data Repository : “Corral” A Geographically Replicated Repository for Research Data Chris Jordan.
Digital Graphics and Computers. Hardware and Software Working with graphic images requires suitable hardware and software to produce the best results.

Digital Graphics and Computers. Hardware and Software Working with graphic images requires suitable hardware and software to produce the best results.
Cluster computing facility for CMS simulation work at NPD-BARC Raman Sehgal.

Cluster computing facility for CMS simulation work at NPD-BARC Raman Sehgal.
1 Down Place Hammersmith London UK 530 Lytton Ave. Palo Alto CA USA.

1 Down Place Hammersmith London UK 530 Lytton Ave. Palo Alto CA USA.
Dell Precision T1600 Sales Aid  What’s New? The Dell Precision T1600 is the next generation of our single-socket, entry-level T1500 workstation. Designed.

Dell Precision T1600 Sales Aid  What’s New? The Dell Precision T1600 is the next generation of our single-socket, entry-level T1500 workstation. Designed.
Research Computing with Newton Gerald Ragghianti Newton HPC workshop Sept. 3, 2010.

Research Computing with Newton Gerald Ragghianti Newton HPC workshop Sept. 3, 2010.

Similar presentations

Ads by Google