We think you have liked this presentation. If you wish to download it, please recommend it to your friends in any social system. Share buttons are a little bit lower. Thank you!
Presentation is loading. Please wait.
Published byRiley Byrne
Modified over 4 years ago
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Enabling the reusability of scientific data: Experiences with designing an open access infrastructure for sharing datasets Simon J. Coles EPSRC National Crystallography Service School of Chemistry University of Southampton
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Data & the Publication Problem 25,000,000 2,000,000 450,000
© S.J. Coles 2006 Usability WS, NeSC Jan 06 A Different Approach to Data Publication? Underlying dataIntellect & Interpretation
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Requirements Capture of all digital data and information generated during the course of an experiment Data validation Adding value Archival system for data with attached bibliographic and chemical metadata Automatic report generation Schema and protocols for publication and dissemination of a dataset
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Open Access Crystal Structure Archive ecrystals.chem.soton.ac.uk
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Access to the Underlying Data
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Publicising Content
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Harvesting, Linking and Aggregating
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: Quality & Uniformity of data Different laboratories, practices & instruments present a heterogeneous body of data Publish according to IUCr ratified schema To support publication according to this schema a toolbox add-on to the archive has been developed Toolbox requires 2 mandatory files only & is capable of performing file format conversions and generate value added files
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: Ease of Deposition & Metadata Quality Minimal number of manual metadata entries – many can be hardwired into the system Deposition guidelines initially prepared by students to provide impartial feedback Full documentation and in-line help/examples Restrained lists, e.g. Keywords Data deposited automatically by toolbox Automated generation of metadata for report and OAI interface
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: Data Validation Peer review removed from self deposit publication Simple checks for consistency made by the toolbox Checks for crystallographic integrity made through a web service (IUCr, CHECKCIF) Introduction of data editor for the archive; a deposition must be signed-off by a recognised professional before going live Quality indicators automatically taken from dataset and presented in HTML jump-off page
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: Identifiers URL of deposited dataset provides an identifier Persistent only if the Institutional support model is accepted / adopted Signed-up to an agency to register metadata relating to datasets with a DOI Pay registry to ensure that DOI always resolves to associated dataset (10cents to register 1cent per annum to maintain) InChI chemical identifier - a unique text descriptor for a molecule
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: Dissemination & Aggregation OAI metadata schema; ratified by IUCr & chemical community OAI covers bibliographic terms; must introduce chemical terms Both library and subject specific aggregators satisfied Chemical linking; InChI, chemical classifications and restricted keywords list
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: Endorsement Feedback during development from technical publishing arm of IUCr Designed for automatic incorporation into CSD (global database operated by CCDC) Accepted by Executive Committee of IUCr Reuse of data achieved in collaboration with Leverhulme Centre for Molecular Informatics
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: Community Uptake Southampton archive about to publish routinely via the archive Five crystallography laboratories in UK agreed to adopt philosophy, install and populate archives CCDC will harvest required data from all archives IUCr will harvest and curate all data Develop aggregator services in collaboration with IUCr
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Usability: The Next Challenges Full acceptance by chemical community –Validation worries –Curation worries –The requirement for as many peer reviewed publications as possible (despite quality) Full acceptance by wider chemistry publishing community –Loss of control over underlying data –Faith in Open Archives replacing experimental descriptions in articles Development of fully functional aggregator services
IATUL Porto, May 21, 2006 DOI and e-Science Dr Anne E Trefethen Oxford e-Research Centre
50 Years of Experience in Making Grey Literature Available Matching the Expectations of the Particle Physics Community Carmen ODell.
Introduction to DataCite Adam Farquhar PhD Head of Digital Library Technology, The British Library President, DataCite June 2010.
Creating Institutional Repositories Stephen Pinfield.
The DART-Europe E-theses Portal Martin Moyle Digital Curation Manager UCL Library Services, UK ETD 2009, University of Pittsburgh, June.
AHM, Nottingham, September eBank UK : linking research data, scholarly communication and learning. Dr Liz Lyon, UKOLN, University of Bath Dr Simon.
A centre of expertise in data curation and preservation DCC/NeSC eScience Workshop, June 2008 Working in partnership with the eScience community This work.
© S.J. Coles 2006 Usability WS, NeSC Jan 06 Experiences in deploying a useable Grid-enabled service for the National Crystallography Service Simon J. Coles.
S.J. Coles a*, M.B. Hursthouse a, R.A. Stephenson a, P. Cliff b, E. Lyon b, M. Patel b J. Downing c & P. Murray-Rust.
Crystal Structure EPrints: Source Through the Open Archive Initiative S.J. Coles a*, J.G. Frey a, M.B. Hursthouse a, L. Carr b & C.J. Gutteridge.
Opening the Research Data Lifecycle Workshop Capturing and Sharing Research Data Simon Coles School of Chemistry, University of Southampton, U.K.
© S.J. Coles 2006 Digital Repositories as a Mechanism for the Capture, Management and Dissemination of Chemical Data Simon Coles School of Chemistry, University.
Linking Data and Publications: the Chemistry Way Simon Coles School of Chemistry, University of Southampton, U.K. CLADDIER workshop.
Chemistry research data in the modern age: A clear need for curation expertise Simon Coles School of Chemistry, University of Southampton, U.K.
S.J. Coles a*, J.G. Frey a, M.B. Hursthouse a, L. Carr b & C.J. Gutteridge b. a School of Chemistry, University of Southampton, UK.; b School of Electronics.
RCUK, Octiber Archiving research data and research publications. Dr Leslie Carr, Intelligence, Agents Multimedia, University of Southampton Dr Simon.
© S.J. Coles 2006 eCrystals: A Route for Open Access to Small Molecule Crystal Structure Data Simon Coles School of Chemistry, University of Southampton,
A centre of expertise in digital information management UKOLN is supported by: Adding Value to Data and Information: Moving towards a Science.
UKOLN is supported by: From research data to new knowledge: a lifecycle approach. Dr Liz Lyon, Director UKOLN, University of Bath, UK JISC/SURF/CNI Conference.
© 2018 SlidePlayer.com Inc. All rights reserved.