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Envisioning Information Lecture 14 – Scientific Visualization

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1 Envisioning Information Lecture 14 – Scientific Visualization
Scalar 3D Data – Volume Rendering Ken Brodlie ENV 2006

2 By controlling the opacity, we can:
Volume Rendering This is a quite different mapping technique for visualization of 3D scalar data (compared with isosurfacing) Aims to relate volume to a partially opaque gel material - colour and opacity at a point depending on the scalar value By controlling the opacity, we can: EITHER show surfaces through setting opacity to 0 or 1 OR see both exterior and interior regions by grading the opacity from 0 to 1 [Note: opacity = 1 - transparency] ENV 2006

3 Example - Forest Fire From Numerical Model of Forest Fire, NCAR, USA
ENV 2006

4 Major application area is medical imaging
Different scanning techniques include: CT (Computed Tomography) MRI (Magnetic Resonance Imaging) SPECT (Single Photon Emission Computed Tomography) Three-dimensional images constructed from multiple 2D slices Slice Scanners give average value for a region - rather than value at a point Interslice gap Slice ENV 2006

5 Examples of Brain Scans
Magnetic Resonance Imaging Computerized Tomography SPECT ENV 2006

6 Example - Medical Imaging
Rendered by VolPack software CT scan data 256x256x226 ENV 2006

7 Data Classification – Assigning Opacity to CT data
CT will identify fat, soft tissue and bone Each will have known absorption levels, say ffat, fsoft_tissue, fbone CT value Opacity a fsoft_tissue 1 This transfer function will highlight soft tissue ENV 2006

8 Data Classificatiion – Assigning Opacity to CT Data
To show all types of tissue, we assign opacities to each type and linearly interpolate between them CT value Opacity a fsoft_tissue 1 ffat fbone ENV 2006

9 Data Classification – Constructing the Gel – CT Data
opacity This is known as opacity transfer function 1.0 CT number 0.0 (f) In practice, the boundaries between materials are of key importance - hence a two-stage algorithm used: (i) Calculate  as above (ii) Scale by gradient of function to highlight boundaries * =  |grad f | grad f = [df/dx,df/dy,df/dz] ? So what is opacity in homogeneous areas ? ENV 2006

10 Data Classification – Constructing the Gel – CT Data
Colour classification is done similarly Known as colour transfer function white red yellow CT number Air Soft Tissue Fat Bone ENV 2006

11 Data Classification – Constructing the Gel – Temperature Data
Volume rendering is also useful for other data - eg CFD temperature Opacity transfer function: possibly increase with temperature Colour transfer function: blue (0,0,1) red (1,0,0) temperature ENV 2006

12 Data Classification in IRIS Explorer
The GenerateColormap tool in IRIS Explorer can be used to assign colour and transparency to data Make sure you know how to save colourmaps from one session to another ENV 2006

13 Example Storm cloud data rendered by IRIS Explorer –
Isosurface & volume rendering ENV 2006

14 There are two major techniques:
Rendering the Volume There are two major techniques: Ray casting Texture mapping ENV 2006

15 Ray Casting to Render the Volume
1 Assign colour and opacity to data values Classification process assigns gel colour to the original data 2 Apply light to volume Lighting model will give the light reflected to the viewer at any point in volume - if we know the normal Imagine an isosurface shell through each data point - surface normal is provided by gradient vector (remember from isosurfacing!) Thus we get colour reflected at each data point ENV 2006

16 Casting the Rays and Taking Samples
3. For each pixel in image a) cast ray from eye through pixel into volume, taking samples at regular unit intervals b) measure colour reflected at each sample in direction of ray c) composite colour from all samples along ray, taking into account the opacity of gel it passes through - en route to the eye data volume ray eye point exit point image plane sample points one unit apart (colour and opacity by interpolation) entry point ENV 2006

17 Compositing the Samples Along the Ray – First Sample
opaque background, emitting I0 I* eye point Intensity - I1 Opacity -  Imagine block of gel, one unit wide around sample point I* = I0 (1 - ) + I1 ENV 2006

18 Compositing the Samples along the Ray – Two Samples
opaque background eye point Intensity - I2 Opacity - 2 Intensity - I1 Opacity -  I* = I0 (1 - ) + I1 from previous slide I** = I* (1 - 2) + I2 2 = I0 (1 - 1)(1 - 2) + I11(1 - 2) + I22 ENV 2006

19 Compositing the Samples along a Ray
The process continues for all samples, yielding a final intensity, or colour, for the ray - and this is assigned to the pixel try it for a third sample, then you should be able to deduce a general formula I = S ni=0 Iii Pnj=i+1(1 - j) Note that if one compositing step is done for each ray in turn, then the next step, and so on, the image will be created in a sweep from back to front, showing all the data (even behind opaque parts) ENV 2006

20 Front to Back Compositing
Compositing can also work front-to-back: I* eye point I* = n In * = n - cumulative opacity Intensity In Opacity n I** eye point I** = I* + (1 - *)n-1In-1 ** = * + (1-*)n-1 Intensity In Opacity n Intensity In-1 Opacity n-1 ENV 2006

21 Front-to-Back Compositing – Early Termination
The advantage of front-to-back compositing is that we can stop the process if the accumulated opacity reaches no point in going further Again, you should be able to deduce the general formula if you look at three samples can you show that front-to-back and back-to-front compositing give the same answer? ENV 2006

22 Maximum Intensity Projection
When performance rather than accuracy is the goal, we can avoid compositing altogether and approximate I by maximum intensity along ray MIP : Maximum Intensity Projection Often used in angiography... ENV 2006

23 Texture-based Volume Rendering
Volume rendering by ray casting is time-consuming one ray per pixel each ray involves tracking through volume calculating samples, and then compositing different for each viewpoint Alternative approach - using texture maps - can exploit graphics hardware ENV 2006

24 Modern graphics hardware includes facility to draw a textured polygon
Texture Mapping Modern graphics hardware includes facility to draw a textured polygon The texture is an image with red, green, blue and alpha components… … this is used in computer graphics to avoid constructing complex geometric models … and we can exploit this in volume rendering ENV 2006

25 Texture-based Volume Rendering
Draw from back-to-front a set of rectangles first rectangle drawn as an area of coloured pixels, with associated opacity, as determined by transfer function and interpolation - and merged with background in a compositing operation (supported by hardware) successive rectangles drawn on top ENV 2006

26 3D Texture-based Volume Rendering
For a given viewing direction, we would need to select slices perpendicular to this direction This requires interpolation to get the values on the slices Until recently this has only been possible with expensive graphics boards volume image plane 3D texture mapping ENV 2006

27 Comparison of Ray Casting and Texture Approaches
Texture-based Texture-based Ray casting ENV 2006

28 Close Up Ogle: texture-based Vlib: ray casting ENV 2006

29 Splatting Another commonly used method is splatting
Fuzzy balls around each voxel projected on to image plane Composited in the image plane VolumeToGeom in IRIS Explorer ENV 2006

30 References Classic paper:
M. Levoy. Efficient ray tracing of volume data. ACM Trans Graphics, Vol 9, 3, pp , 1990 Recent work: Ray casting: S. Grimm, S. Bruckner, A. Kanitsar, E. Groller.Memory efficient acceleration structures and techniques for CPU-based volume raycasting of large data. In Proceedings of the IEEE Symposium on Volume Visualization and Graphics 2004 (Oct. 2004), pp. 1-8. Texture-based: K. Engel et al, Real-time volume graphics. Tutorial 28 in SIGGRAPH2004, See < ENV 2006

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