Presentation is loading. Please wait.

Presentation is loading. Please wait.

Scratchpads Vincent S. Smith, Simon D. Rycroft, & Dave Roberts getting biodiversity on the web.

Similar presentations


Presentation on theme: "Scratchpads Vincent S. Smith, Simon D. Rycroft, & Dave Roberts getting biodiversity on the web."— Presentation transcript:

1 Scratchpads Vincent S. Smith, Simon D. Rycroft, & Dave Roberts getting biodiversity on the web

2 Scratchpads 1.Concept, hosting & config. 2.Applications & users 3.Functionality 4.Future directions - talk outline

3 Scratchpads - Concept 1. Your Data 2. Submitted via Web forms 3. Creates your Scratchpad

4 Scratchpads - Hosting & configuration Single virtual machine LAMP software setup Host Drupal CMS (multisite config.) Shared permissions, roles & sys. tables Shared modules Apache name based virtual hosts Separate site databases & content Auto. site creation via scripts Configuration Self content archival (citable) Daily backup (last 6 months) Archival & Backup

5 Scratchpads - Application process Biological focus Must agree to T&Cs CC license by-nc-sa Signup Requirements Name Scope Mission statement (Sub)domain name 3rd party API keys Signup Form

6 Scratchpads - Use / users Taxon (x13) Checklists (x4) Societies (x4) Administrative (x2) Regional (x2) e-Journals (x1) Site types* (26 total) Registered users (200) Total pages (40k) Page views (700k) Collective visits (46k) Usage Statistics* 1 June - 1 Sept. 07*

7 Scratchpads - Help screencasts Signup Overview Simple maps Forum Taxonomy Filestore Literature Images Custom data Administration Videos with Commentary And 14 more…

8 Username: test Password: password Sandbox Automatically resets every hour Scratchpads - Testdrive

9 Functionality - Taskguide

10 Functionality - Google Maps Geolocate points Point & Click Map Creation Presence/Absence Maps

11 Functionality - Forum & document management Standard forum & document management functions

12 Functionality - Classifications (basic features) Multiple classifications List terms Basic editing Classify any content View classified content

13 Functionality - Classifications (import) uBio ClassificationBank Excel File Import

14 Functionality - Classifications (advanced features*) Advanced Intuitive Editing PygmyBrowse Coming soon*

15 Functionality - Scholarly publications Manage bibliographies Edit references Import / export lists OpenURL (via BioGUID) OAI Protocol

16 Functionality - Images Bulk upload & annotation Extensive browse & search Rights control Web image labeling Two sets of RSS feeds

17 Functionality - Store & visualize Newick formatted phylogenies* Coming soon*

18 Functionality - Genes, DNA sequences, specimen lists, custom data Coming soon* *

19 Functionality - Administration Unlimited site users Template user roles Customize & control all content Organic groups for collaboration Built in logs & spam filtering OpenID single sign-on One click backup downloads* Coming soon*

20 3. Data warehouse / EDIT CDM Future Directions (Sharing module choices, development & scripts, developing the Scratchpads as a general science tool) (Possible data source, unlikely to be pursued until after first release of EOL in Feb. 08) (Warehouse feeding iSpecies2 as envisioned in / data source for EDIT CDM) Global Biodiversity Information Facility (GBIF) 1. Woods Hole Oceanographic Institute (WHOI) & 2. Encyclopedia of Life (EOL)

21 Acknowledgements Malcolm Scoble (NHM, Entomology) Chris Lyal (NHM, Entomology.) Rod Page (Univ. of Glasgow)

22 Questions?

23


Download ppt "Scratchpads Vincent S. Smith, Simon D. Rycroft, & Dave Roberts getting biodiversity on the web."

Similar presentations


Ads by Google