Presentation on theme: "May F. Mo FDA/Industry Statistics Workshop"— Presentation transcript:
1Total Analytical Error Evaluation in Quantitative and Qualitative Assays May F. MoFDA/Industry Statistics WorkshopWashington, DC - September 29, 2006
2Background Total Analytical Error (TAE) NOT a new concept Assay errors from all sources of the data collection experiment – including systematic and random errorCLSI Proposed Guideline January 2002CLSI Approved Guideline April 2003FDA/Industry collaboration in developing the guidelineTAE concepts have been seen in publications since 1960s.TAE does not include pre-analytical and post-analytical errors.
3Cause and Effect Diagram for Total Analytical Error (from EP21-A)
4Importance of TAE For Clinicians For Laboratories For Manufacturers TAE provides a metric of assay quality that can directly equate to medical errorsFor LaboratoriesTAE provides a simple, cost effective method for comparing assay productsFor ManufacturersTAE guides manufacturers to set appropriate design goals and evaluate the product directly to user needsFrom a clinician’s standpoint, TAE is more important metric, because an incorrect laboratory result, regardless of which error source causes it, is harmful.It is difficult to otherwise two assays that one has a higher precision and the other has a higher bias.For regulator, this can be a quick, one-step acceptance of substantial equivalence of two assays.
5TAE Evaluation Methods TAE is evaluated by assessing if the combination of errors from all sources is within some acceptance limit. The common evaluation methods are (Krouwer, 2002):Direct EstimationIndirect EstimationSimulated EstimationNote: All methods are based on the quantitative assays.
6Direct EstimationDirect Estimation (Distribution of Differences Method)EP21 RecommendationCalculate differences of study assay vs. reference assayTAE limit estimated as the CLI of the differences- No need to estimate and combine individual source errorsVisual tools - Bland & Altman and “Mountain Plot”Mountain Plot – a folded empirical cumulative distribution plotCLI – Confidence Limits for Individual Observations
7Direct Estimation (Continued) Is distribution of differences normal?Parametric? Nonparametric? or Data Transformation?Tolerance Interval: A range that contains a specified proportion of a sampled population with a specified confidence. (EP21)Parametric or nonparametric methods to report tolerance intervals are covered in Statistical Intervals by Hahn and Meeker (1991).TAE limit can be considered as the 2.5th/97.5th percentile (nonparametric) or CLI, which have uncertainty as well.The interval is an one time measure of the range that contains a specified proportion of sampled population.Tolerance Interval: Statistical inference – a range with confidence.A two-sided nonparametric 100(1-)% tolerance interval to contain at least 100p% of the sampled differences from a sample of size n is [x(l), x(u)].
8Tolerance Interval (TI) Calculation A two-sided 100(1-)% TI to contain at least 100p% of the sampled differences from a sample of size n:Parametric:where k depends on , p and n, and can be obtained from published tables, or derived using noncentral t-distribution (Odeh and Owen, 1980)NonparametricTI based on rank statistics is [x(l), x(u)].The value of l and u depend on , p and n, and can be derived using published tables, or using equation provided in Hahn and Meeker (1991)Both calculations are now available in SAS:PROC UNIVARIACIPCTDF for nonparamatric (distribution-free)CIPCTNORMAL for parametricThe only problem is SAS currently only provides TL for percentiles 1, 5, 10, , 90, 95, 99. The most needed 2.5th and 97.5th are not currently provided. This concern has been raised to SAS.
9Indirect Estimation Indirect Estimation (Simple Combination Model) TAE = Bias + k * ImprecisionSimple to applyFits well with the Six-Sigma quality conceptsNot recommended by EP21 - Underestimate TAESimulation Method (Research Use)Cost-efficientModel the impact of an individual error component to TAECan underestimate TAEK is the number of SD. It is mostly assigned as 2 or 1.65.This model underestimate TAE for the following reasons:Not using real patient samplesNeglecting random interference biasNot including all sources of potential systematic errorCan simulation method be used to support TAE claim?
10Industry Practices Quantitative Assays Set Product RequirementSet allowable TAE (aTAE) limit based on medical opinion and marketing needsBreak aTAE down to precision and bias design requirements using simple combination model.Example: TAE = Bias + 2*SD (for 2 sigma performance)Design Verification and ValidationVerify design requirements individuallyA direct assessment of total error should be conducted to ensure aTAE is met.This is also called ‘error budgeting’Each error components meeting the design requirement can not guarantee aTAE is met.
11Industry Practices Quantitative Assays TAE Claims in Package InsertsNot Yet CommonConcerns?Indirect method – Is it sufficient to establish a TAE claim?Direct method - When the reference assay is not a “gold standard”, TAE has measurement error from both assays … How to interpret?User environment – Are our customers ready to use TAE claims in the package inserts?
12Generalize TAE to Qualitative Assays MotivationTAE provides rationale to establish product requirementsTAE provides a final metric to evaluate if a product meets medical needsChallengeTAE is a quantitative conceptTAE does not apply to low negative and high positive samples
13TAE in Qualitative Assays The performance of a qualitative assay relies on its precision and bias near the medical decision point (cutoff) …TAE evaluation applicable and desirable for the cutoff zoneDirect estimation not realistic due to limited patient samples around cutoffIndirect modeled approach may be more practical
14aTAE in Qualitative Assays How to define aTAE for the near cutoff zone?EP12-A Guidance:The 95% interval - the values above and below the cutoff point at which repeated results are 95% positive or 95% negative, respectivelyGrayzone - the zone of uncertainty between the 95% interval limitsIt seems that the focus of EP12-A in measurement error around cutoff is random error (precision) rather than systematic error (bias) …
15aTAE in Qualitative Assays Grayzone5%5%Upper 95%IntervalLower 95%IntervalCutoff
16aTAE in Qualitative Assays Set aTAE for the near cutoff zoneIncorporating measurement errors from both precision and bias, aTAE can be set as ½ of the grayzone. That is, the test result at 1.2 S/CO should read as positive (>1.0 S/CO) while test results at 0.8 S/CO should read as negative (<1.0 S/CO).Assuming that grayzone is S/CO for an assay, aTAE will be 0.2 S/CO or 20% (assuming cutoff=1.0 S/CO)When the above aTAE is met, there should be < (i.e., 0.05) probability that a test results will deviate >20% from the true value, and cause a change in the final interpretation.
17aTAE in Qualitative Assays Set aTAE for the near cutoff zoneFor an assay that reports an indeterminate result, aTAE can be extended as the size the grayzone.The test result at 1.2 S/CO should not read as negative (<0.8 S/CO) while test results at 0.8 S/CO should not read as positive (>1.2 S/CO).In this case aTAE can be set at 0.4 S/CO or 50% for results around 0.8 S/CO and 33% for results around 1.2 S/CO.
18TAE Evaluation for Qualitative assay Direct Evaluation – Not realisticIndirect EvaluationTAE = Bias + * PrecisionChallenge: How to define and measure Bias?How to include ALL bias sources?Alternative: TAE = * ReproducibilityReproducibility includes variations contributed from instrument, lot, calibration, operator, etc …Underestimate TAE is still then main concernThe instrument to instrument, lot to lot, calibration to calibration variation are typically considered as bias, rather than imprecision.If TAE estimate<aTAE, a claim cannot be established; however, if TAE>aTAE, then the conclusion can be made that the product failed the aTAE goal.
19TAE in Qualitative Assays How do different types of bias impact TAE?Bias impacts both S and COAs a proportional biasThe will be no bias in S/COAs a fixed biasThe bias in S/CO is unknown and depends on the value of S relative to CO (=1.0) and size of the biasCO=1.0BiasS-0.2-0.10.10.20.80.750.780.820.830.90.880.890.910.921.01.001.11.131.111.091.081.220.127.116.11.17
20TAE in Qualitative Assays How does different type of biases impact TAE?Fixed bias for both S and CO: The impact on S/CO is relatively small for the near cutoff range ( S/CO)Biases that impact S and CO differently:InterferencesTube TypeStorageSample Carry OverCrossreactivity …
21ConclusionTAE is an useful evaluation method for both quantitative and qualitative assays. For qualitative assays, TAE should be evaluated for the near cutoff zone using indirect estimation. Since indirect method underestimates TAE, it may not be sufficient to support a claim.
22ReferencesNCCLS. Estimation of Total Analytical Error for Clinical Laboratory Methods; Approved Guideline. NCCLS Document EP21-A [ISBN X]. NCCLS, 940 West Valley Road, Suite 1400, Wayne, Pennsylvania USA, 2003.NCCLS. User Protocol for Evaluation of Qualitative Test Performance; Approved Guideline. NCCLS Document EP12-A [ISBN ]. NCCLS, 940 West Valley Road, Suite 1400, Wayne, Pennsylvania USA, 2002.Hahn GJ, Meeker WQ. Statistical Intervals: A Guide for Practitioners. New York: John Wiley and Sons, 1991.Krouwer JS, Monti KL. A simple graphical method to evaluate laboratory assays. Eur J Clin Chem Biochem 1995; 33:525–7.Odeh, RE, Owen, DB. Tables for Normal Tolerance Limits, Sampling Plans, and Screening. New York Marcel Dekker, 1980.