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Complex Systems Modeling and Networks Summary of NECSI Course CX202 11 February 2009 John M. Linebarger, PhD Sandia National Laboratories Interactive Systems.

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Presentation on theme: "Complex Systems Modeling and Networks Summary of NECSI Course CX202 11 February 2009 John M. Linebarger, PhD Sandia National Laboratories Interactive Systems."— Presentation transcript:

1 Complex Systems Modeling and Networks Summary of NECSI Course CX February 2009 John M. Linebarger, PhD Sandia National Laboratories Interactive Systems Simulation & Analysis (06344) Sandia is a multiprogram laboratory operated by Sandia Corporation, a Lockheed Martin Company, for the United States Department of Energys National Nuclear Security Administration under contract DE-AC04-94AL85000.

2 Outline Overview What are Complex Systems? Complex Networks –Metrics –Types of Networks Modeling and Simulation of Complex Systems –How to Model –Types of Models Further Reading Class Project Overview of Design for Tractable Analysis (DTA) framework

3 Overview I attended a Complex Systems Modeling and Networks (CX202) course from June 2008Complex Systems Modeling and Networks –I used all 32 of my FY 2008 Strategic Education Initiative (SEI) hours on the course; the balance was covered by the Systems Analysis LDRD. The course was held at the New England Complex Systems Institute (NECSI) on the campus of the Sloan School at MIT, in Cambridge, MANew England Complex Systems Institute The course prerequisite is CX201, Complex Physical, Biological and Social SystemsComplex Physical, Biological and Social Systems –I fulfilled the prerequisite by reading Making Things Work by Yaneer Bar-Yam, and Linked by Albert-László Barabási, before the course beganMaking Things WorkLinked The follow-on course is CX203, Methods for the Study of Complex Systems, which is mathematically-orientedMethods for the Study of Complex Systems

4 Overview (contd) Over 30 attendees from all over the world, predominately PhD students and academics –Only three or four people from industry –My project group consisted of a Norwegian PhD student, a South Korean health care researcher (working in the Boston area), an Iranian PhD student (studying in Maryland), and a Bulgarian PhD student (studying in France) The course was divided into two parts –The first part was complex network analysis, taught by Dan Braha of NECSI and UMass Dartmouth –The second part was modeling and simulation of complex systems, taught by Hiroki Sayama of NECSI and SUNY Binghamton Project groups met each evening, often until quite late, to work on their course project Projects (and the associated papers) were presented to the class on Friday, followed by the final exam for the course

5 NECSI Course Participants

6 What are Complex Systems? Complex systems are characterized by emergent, self- organizing, collective behavior –Such emergent collective behavior often arises due to the combination of simple individual behavior patterns The components of a complex system are interdependent Complex systems exhibit multiscale variety –The structure of the system differs depending on the level at which it is viewed –A common pattern is a mixture of competition and cooperation at different levels of the system Complex systems arise due to evolutionary, not deterministic, processes –Engineered systems should be implemented this way too Examples of complex systems include the health care system, the education system, and recent military conflict From Making Things Work by Yaneer Bar-Yam

7 Another Characterization of Complex Systems Complex systems contain many constituents interacting nonlinearly The constituents of a complex system are interdependent A complex system possesses a structure spanning several scales A complex system is capable of emerging behavior Complexity involves an interplay between chaos and non-chaos –Complex systems dance on the edge of chaos Complexity involves an interplay between cooperation and competition From Chaos, Complexity, and Entropy by Michel Baranger

8 Wicked Problems Every wicked problem is essentially unique There is no definitive formulation of a wicked problem Wicked problems are never solved A wicked problem is not understood until after the formulation of a solution Solutions to wicked problems change the problem itself Solutions to wicked problems are not true or false, but better or worse Stakeholders have radically different world views and different frames for understanding the problem Conclusion –Wicked problems are a proper subset of complex systems –All wicked problems are complex systems, but not all complex systems are wicked problems

9 Dancing on the Edge of Chaos Two fundamental assumptions of most systems analysis are that the system is continuous, and that if it is decomposed far enough it becomes simple –It can then be analyzed without loss of fidelity These assumptions may be driven by the predominant analytical tool of 20 th century physics, which was calculus –For both derivatives and integrals, if you zoom in far enough a curve becomes a straight line –Thus a calculus problem is transformed into a geometry problem, which has been well understood since Euclid However, chaotic systems are often discontinuous, and the decomposition of chaotic systems generally yields more complexity –e.g., fractals, Sierpiński triangles The arrogance of analysis Yet chaotic systems often are simple, not in terms of their decomposition, but in terms of the rules that govern their behavior –e.g., boids, where simple rules lead to complex flocking behaviorsboids

10 Complex Networks The interdependencies of complex systems are often modeled by networks Networks can be analyzed using several important metrics from graph theory –Directed (nodes and arcs) vs. undirected graphs (nodes and edges) –Number of nodes (N): The number of nodes in a network –Degree (k): The number of edges or arcs incident on a node Average degree is denoted as Can distinguish between in degree and out degree –Node density is actual connections between nodes divided by potential connections that could exist between nodes Note that real-world networks are quite sparse, and have an average density of –Characteristic path length (L): The average length of the shortest path in the network between two nodes –Clustering coefficient (C): Number of actual links between neighbors of a node divided by the number of possible links between those neighbors This can be thought of as local density, the probability that two neighbors know each other The clustering coefficient is a measure of modularity

11 Random Networks For years (since the late 1950s) the dominant model of networks was the random network, otherwise known as the Erdős-Rényi model, even though it is rarely seen in nature Random graphs have a fixed number of nodes which are connected randomly by undirected edges. The number of edges depend on a specified probability. The seminal paper is On Random Graphs, by Erdős and Rényi (1959)

12 Small-World Networks Adding a small number of links to a regular ring network, in which only the nearest neighbors are connected, can have dramatic effects The characteristic path length becomes quite small with only a small number of such cross- neighborhood links Small-world networks are pervasive in nature: Friend networks, power grids, predator-prey networks, and even neural networks of the brain. The seminal paper is Collective Dynamics of Small-World Networks, by Watts and Strogatz (1998)

13 Scale-Free Networks Scale-free networks are so- called because they have no characteristic scale, or average number of links per node Instead, they are characterized by numerous hubs that hold together highly connected regions of the network However, direct connections between hubs are rare (for reasons of resilience) Scale-free networks are also pervasive in nature: Disease propagation, terrorist networks, and the World-Wide Web The seminal paper is Emergence of Scaling in Random Networks, by Barabási and Albert (1999)

14 Scale-Free Networks (contd) Scale-free networks seem to follow a power law distribution (which is a variant of a Pareto distribution, or the 80/20 rule) Earlier models (such as Erdős-Rényi) described networks using a bell curve, with many nodes with the same number of links and no highly connected nodes The scale free model describes networks as having many nodes with only a few links, and a few nodes with many links Power law functions appear as straight lines on a log-log plot Most nodes have the same number of links No highly connected nodes Many nodes with few links A few nodes with many links # of links (k) # of nodes with k links Bell Curve Power Law Distribution

15 Scale-Free Networks (contd) P k ~ e -k P k ~ k -γ

16 Scale-Free Networks (contd) In a more formal sense, a scale-free network is characterized by two properties –Continuous growth (the other network models did not consider growth) –Preferential attachment (e.g., the rich get richer) The number of nodes with exactly k links follows a power law for any value of k –P(k) ~ k -γ –Often 2 < γ < 3 However, many real-world networks actually exhibit stretched exponential behavior, becoming exponential past a threshold –Cost of adding new links –Aging From Faloutsos, M., P., & C., On Power-Law Relationships of the Internet Topology (1999)

17 Topology is Destiny! Characterizing a network quantitatively gives insight into the dynamics (performance) and vulnerabilities of the network Random graphs have a short path length (good), but also a small clustering coefficient (not good) Regular ring networks have a large clustering coefficient (good) but long path length (not good) Small-world networks are a balance between those two extremes, but do not have the robustness of scale-free networks Scale-free networks (which are similar in some ways to small-world networks) are robust against random attacks (good) but not against targeted attacks (not good) –The hubs are vulnerable when directly targeted –The network can become disconnected fairly rapidly in this kind of attack The moral of the story: When it comes to networks (and to everything else in life), you cant have it all …

18 How Complex Network Research is Done A network under study is represented and analyzed mathematically A randomly generated ensemble of networks is created with which to compare to the network under study –Ensembles of several types of networks are generated, such as random graphs, small world, regular ring, and scale-free The network ensembles are analyzed mathematically and compared to the network under study Both the network under study and the generated ensembles are subjected to the same process (e.g., attack), generally via simulation, and the results are compared

19 Tools for Complex Network Analysis Pajek, an open source tool that generates and visualizes networksPajek –A useful book is Exploratory Social Network Analysis with Pajek, by de Nooy et al.Exploratory Social Network Analysis with Pajek UCINET, a commercial tool from Analytic Technologies that quantitatively analyzes networksUCINET Python with the NetworkX packagePythonNetworkX MATLAB, a commercial tool from MathWorks, which can generate, visualize, and quantitatively analyze networks after a simple matter of programmingMATLAB –Free network analysis packages are available for MATLABFree network analysis packages

20 Modeling and Simulation of Emergent Behavior Fundamentals of Modeling Modeling and Simulation of Dynamical Systems (complex interdependent systems that can exhibit emergent behavior) –Non-Spatial Modeling –Cellular Automata –Agent-Based Models –Network Models Other Simulation Paradigms for Dynamical Systems (not covered in the course) –Systems Dynamics Numerous commercial packages exist, such as VensimVensim Can be described in terms of difference or differential equations, so can be addressed by non-spatial modeling –Spatial models with partial differential equations –Soft computing (e.g., evolutionary computation, artificial neural networks, or support vector machines)

21 Fundamentals of Modeling Scientific laws are really hypotheses, models of observed behavior There is no way to prove anything about nature, although it is easy to disprove something A model is a simplified representation of a system Rule-based modeling allows the systems possible or future states to be extrapolated, unlike descriptive modeling, which just specifies the systems actual or past states A good model is simple, correct, and robust

22 Modeling Procedure In general –Observe the system of interest –Reflect on the possible rules that might cause the systems characteristics –Derive predictions from those rules and compare them with reality –Repeat to modify the rules until satisfied For complex systems –Define the key questions and choose the right scale of modeling –Identify the structure (the parts and their connections) of the system –Define the possible states for each part (state space) –Describe how the state of each part changes over time through interactions with other parts Models must be evaluated and validated, in terms of simplicity, correctness, and robustness

23 Tools Used for Modeling and Simulation Python NumPy and SciPy (MATLAB-like numerical packages for Python)NumPy and SciPy matplotlib (MATLAB-like visualization library for Python)matplotlib NetworkX (network graphing package)NetworkX Agent-based modeling toolkits, such as NetLogo, StarLogo, or Swarm (see the Swarm Wiki for other tools)NetLogo StarLogoSwarmSwarm Wiki And, of course, MATLAB …MATLAB

24 Non-Spatial Modeling The simplest mathematical model –Called non-spatial because the spatial location of the elements of the system is unimportant A dynamical system is a system whose state is uniquely specified by a finite set of variables and whose behavior is uniquely determined by predetermined rules –Examples are simple population growth, simple pendulum swing, motion of celestial bodies Two schools of modeling dynamical systems –Discrete-time model (using difference/recurrence equations or iterative maps) –Continuous-time model (using differential equations) Non-autonomous, higher-order equations can always be converted into autonomous, first order equations, by introducing additional variables Non-linear systems are generally simulated because they cannot be solved analytically Exercise: Logistic growth (

25 Cellular Automata Adds spatio-temporal dynamics, especially for locally connected networks, to the modeling process Cells in a regular grid interact with their nearest neighbors according to simple interaction rules –Transition from one state to another depends on simple rules based on interactions with neighbors –The resulting system is a linear system Example: Simple diffusion, panic in a gym Exercise: Decide whether or not to panic based on the state of a simple majority of your neighbors (

26 Agent-Based Models The only way to study the behavior of agent- based models is to simulate, since no global equation exists, only equations at the agent level Agent characteristics (what makes an agent an agent) –Local state –Spatial localization –Local interaction with other agents based on predefined rules –No central supervisor –May learn autonomously –May produce non-trivial collective behavior

27 Agent-Based Models (contd) To develop an agent-based model –Identify the agents and get a theory of agent behavior –Identify the agent relationships and get a theory of agent interaction –Get the requisite agent-related data –Validate the agent behavior models in addition to the model as a whole (thus you must justify your model relative to the real- world, including emergent behavior) –Run the model and analyze the output Exercise: Garbage collection by ants ( –Eventually, only one pile of garbage remains –No simulation of the environment is needed, just tracking of the environment; however, if pheremones were emitted and decayed with time, the environment would need to be simulated as well, based on a model of pheremone decay An excellent two-part tutorial was presented by Macal and North at the Winter Simulation Conference in 2005 and 2006, respectively

28 Network Models Simulation of the types of complex networks we learned about in the first part of the course Uses the NetworkX package from LANLNetworkX –Has methods to create random networks, small- world networks, and scale-free networks Exercise: A disease epidemic on a random network ( –Two parameters: Infection probability and recovery probability –Red means infected; yellow means susceptible –Note that the disease is never completely eradicated from a social network; this is called the fixation of a disease –Can experiment with different network topologies

29 Further Reading Complexity and Chaos –Making Things Work, by Yaneer Bar-Yam (2005)Making Things Work –Ubiquity: The Science of History … or Why the World is Simpler than We Think (a.k.a. Ubiquity: Why Catastrophes Happen), by Mark Buchanan (2001, 2002)Ubiquity: The Science of History … or Why the World is Simpler than We ThinkUbiquity: Why Catastrophes Happen –Chaos: Making a New Science, by James Gleick (1988)Chaos: Making a New Science –The Dynamics of Complex Systems, by Yaneer Bar-Yam (1997)The Dynamics of Complex Systems Complex networks –Linked, by Albert-László Barabási (2003)Linked –Small Worlds: The Dynamics of Networks between Order and Randomness, by D. J. Watts (2003)Small Worlds: The Dynamics of Networks between Order and Randomness –Exploratory Social Network Analysis with Pajek, by de Nooy, et al. (2005)Exploratory Social Network Analysis with Pajek Modeling and simulation of dynamical systems –Cellular Automata, by Andrew Ilachinski (2001)Cellular Automata –Python Scripting for Computational Science, 3 rd ed., by Hans Petter Langtangen (2006)Python Scripting for Computational Science –Simulation Modeling and Analysis, 4 th ed., by Averill Law (2007)Simulation Modeling and Analysis

30 Class Project

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