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Clustering Overview Algorithm Begin with all sequences in one cluster While splitting some cluster improves the objective function: { Split each cluster in two so that the objective function has the greatest possible improvement at that step Reassign individual sequences into the cluster while doing so improves the objective function } The Objective Function I( X i ; X j |C ) i

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Hierarchical Clustering Produces a set of nested clusters organized as a hierarchical tree Can be visualized as a dendrogram – A tree like diagram that.

Hierarchical Clustering Produces a set of nested clusters organized as a hierarchical tree Can be visualized as a dendrogram – A tree like diagram that.

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