Presentation on theme: "Supplement 5 Comparison of homoeologous Kanota x Ogle (KO) linkage groups 24_26_34 and 22_44_18 and the location of As-Vrn1 mapped as an RFLP in KO. Stacked."— Presentation transcript:
Supplement 5 Comparison of homoeologous Kanota x Ogle (KO) linkage groups 24_26_34 and 22_44_18 and the location of As-Vrn1 mapped as an RFLP in KO. Stacked horizontal lines show the locations of additional markers placed on the map framework. Solid lines are used to join markers found in common between homologous oat groups, while dotted lines join markers found in common between homoeologous oat groups or chromosomes from different species. A list of markers joined by lines is provided separately. Boxes show the approximate locations of QTL identified in previous studies, some of which are placed on the KO map using comparative mapping (Wight et al. 2006). The letters in each box indicate which reference should be consulted for further information concerning the particular QTL: H, Holland et al. 1997; h, Holland et al. 2002; S, Siripoonwiwat et al. 1996. The letters in bold text in grey boxes indicate QTLs for which the experiment-wide type I error rate was p <0.05 or the comparison-wide type I error rate was p <0.001. The remaining QTL had comparison-wide type I error rates of p <0.05. The framework marker on KO group 24_26_34 corresponding to the regions on the U86 and U71P maps containing QTLs for flowering time and vernalization response is highlighted and boxed, as is the location of the Vrn1 gene on group KO 22. Other groups and highlighted markers provide comparative mapping evidence for the location of Vrn1 in this region. The OT (Ogle x TAM O-301) hexaploid oat map is from Portyanko et al. (2001), the fragment of the barley SM (Steptoe x Morex) chromosome 5H map is from Kleinhofs et al. 1993, and the simplified diagram of the fine mapping of the Vrn1 region of wheat chromosome 5Am is based on the work of Yan et al. (2003). The location of the Vrn-H1 gene on the barley map presented has been determined using the Graingenes database CMap comparative mapping function (http://wheat.pw.usda.gov/cmap/) and the results of von Zitzewitz et al. (2005). (See figure on next page)
KO group 24_26_34 S H S HHhhh SHHHH hh h H h H h h S H S e40m48-173.t  OT group 1 cdo1081a  cisu128b  cdo87  isu1877b  rz912  cisu92  cdo590a  rz474a  cdo795a  isu1093  psr153  psr144  adh2a  cisu59a  cdo504 isu1961a Barley SM chromosome 5H mwg851b  mwg851c  abg314b  abg463  cdo484  abg390  abg391  abc482  abc155  abg495a  mwg877  wg908  iest9  cdo504  mwg514b  wg644 isu1961brv wg644 cdo708 Vrn1 Wheat chromosome 5A m 0.1 0.9 KO group 22_44_18 opt-9086_c  cdo482b  umn5596_1  umn5004  isu1507  opt-9724  opt-13454  opt-7417_c  opt-8196  opt-18069  cdo484a  opt-1641_c  opt-17202  opt-6646  opt-5664  isu1961crv  opt-0526  cdo708b  aco168a  cdo608drv  opt-15453  opt-8693  opt-5272  opt-11625_c  opt-9929_c  opt-14108  opt-6715  cdo1196  bcd327  csu25  Vrn1 (Vrn-H1) See details of connecting lines on following page
Your consent to our cookies if you continue to use this website.