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Synthetic Biology at Davidson College Building Bacterial Computers.

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Presentation on theme: "Synthetic Biology at Davidson College Building Bacterial Computers."— Presentation transcript:

1 Synthetic Biology at Davidson College Building Bacterial Computers

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3 Advantages of Biological Computers go anywhere - arctic, thermal vents, inside organisms no electricity self-replicating no immune rejection

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5 Two Recent Research Projects

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7 Flipping DNA with Hin/hixC

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10 14 2 53 Hamiltonian Path Problem

11 14 2 53 Hamiltonian Path Solution

12 Engineering Biological HPP

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16 Hin-mediated recombination

17 Engineering Biological HPP

18 Predicting Outcomes of Bacterial Computing

19 Does Starting Place Matter?

20 Equilibrium Does Starting Place Matter?

21 How Many Plasmids Do We Need?

22 Split Genes to Encode Problem

23 gcat.davidson.edu/GcatWiki/index.php/Davidson_Missouri_W/Davidson_Proto cols

24 Split Reporter Genes Green Fluorescent Protein Red Fluorescent Protein

25 Split Reporter Genes RFP Split by hixC GFP Split by hixC

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29 Paper Published 7/09 15 undergraduate coauthors Paper of the year, 2009

30 Can we solve the SATisfiability problem?

31 Define the SATisfiability Problem

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34 Converting Math to Biology

35 Central Dogma

36 Frameshift Mutation

37 Frameshift Suppression

38 Suppressor tRNA

39 Coding 2-SAT Clause

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42 Outcomes of v 1.0

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44 Redesign System v2.0 positive feedback loop

45 Outcomes of v 2.0 - control frame shift “leak” +tRNA CGGUC +tRNA CCACU + control

46 Outcomes of v 2.0 frame shift “leak” +tRNA CGGUC +tRNA CCACU + control

47 Why build bacterial computers?

48 Evolution of Computers 1943

49 iPhone in 2011 Evolution of Computers

50 E. coli in 2011 ? Living Hardware in 2021 Evolution of Bacterial Computers

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