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Classification according to M.J. Daboussi and al. 2003 TE : Transposable Element The most abundant Transposable Elements.

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Presentation on theme: "Classification according to M.J. Daboussi and al. 2003 TE : Transposable Element The most abundant Transposable Elements."— Presentation transcript:

1 Classification according to M.J. Daboussi and al. 2003 TE : Transposable Element The most abundant Transposable Elements

2 Potential copy number Pogo family Ant1 /Tc1 family Related hAT-like Copia / Ty1- like family Gypsy / Ty3- Like family LINE Class IIClass I The most abundant Transposable Elements

3 scaffold 11 PYRET_I TCN1TSE3 BOTY FORTLPTCA3 AFUT1CfT-1 MAGGY_ICgret PyretSKIPPY MGRL3Gypsy-1-I TF2Pot2 GYPSY1 TY3grh MarY1 REAL MAGGY Nia I-1 PmRT1 TAD1 MGL TAD1 MGL PmRT1 LbRT4LbRT6 scaffold 24 NHT1POT2 Fot4 Mariner-7 CfT-1MAGGY_I BOTYTCN1 FORTLPTCA3 TF2Pot2 AFUT1PYRET_I TSE3Cgret MGRL3FSOGAGPOL SKIPPYGYPSY1 REAL grhMAGGY MarY1TY3 Tcn760 scaffold 21 TSE1TSK1 TPA5 Nia Mariner-6 Helitron-1 TCN1GYPSY1 MAGGYREAL CgretmarY2 SKIPPY MarY1FORTLP AFUT1BCBOTYPOL PcGR1 POT2 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 1000 1050 1100 1150 1200 1250 1300 1350.10 3 nucleotides Gypsy / Ty3 family Copia / Ty1 family LTR retrotransposons: Non-LTR retrotransposons: LINE Classe I Tc1 / mariner: Pogo family Ant1 / Tc1 family Related hAT Classe II The most abundant Transposable Elements

4 scaffold 1 TCN6 copia-3 TFO1 TSE1 Mariner-5 Nia TCN2 YLT1 PCAL copia-3 FLIPPERMariner-8 Mariner-7Mariner-6 0 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 2800 3000 3200 3400 3600 3800 scaffold 6 SKIPPYMarY1 Gypsy-1grh CfT-1marY2 AFUT1Pot2 TCN1MGRL3 MARY1 Cgret TKL1 marY2PcGR1 MAGGY_ICfT-1 TKL1 scaffold 3 TCN3TCN4 Fot3Fot4 FLIPPERFTF1 Mariner-8 FLIPPERMariner-6 NHT1 PYRET_IBoty PcGR1Pot2 BCBOTYPOLREAL MarY1MGRL3 scaffold 16 LbRT4LbRT6 Mariner-5 TY3 FORTLP TF2 marY2grh GYPSY1MARY1 Cgret REALAFUT1 marY2.2.10 3 nucleotides Gypsy / Ty3 family Copia / Ty1 family LTR retrotransposons: Non-LTR retrotransposons: LINE Classe I Tc1 / mariner: Pogo family Ant1 / Tc1 family Related hAT Classe II The most abundant Transposable Elements

5 Nia PCAL TKM1TSE5 LbRT2LbRT3 LbRT4LbRT5 LbRT6 PmRT1 TY5 hornet2 TCN2TCN5 TCA3 scaffold 41 TAD1 I-1 TPA5 NHT2 TSE3 TSE5 TY5 TDH5PmRT1 LbRT6LbRT5 LbRT4LbRT3 LbRT2 PCAL scaffold 38 Fot3Fot4 NHT1FTF1 Mariner-6POT2 FLIPPERMariner-8 mpVINHT1 scaffold 45 0 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900.10 3 nucleotides Gypsy / Ty3 family Copia / Ty1 family LTR retrotransposons: Non-LTR retrotransposons: LINE Classe I Tc1 / mariner: Pogo family Ant1 / Tc1 family Related hAT Classe II The most abundant Transposable Elements


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