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Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acaagtgatc - a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1,

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Presentation on theme: "Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acaagtgatc - a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1,"— Presentation transcript:

1 Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acaagtgatc - a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

2 Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc - 0-2-3-4-5-6-7-8-9-10 a c a g a g t a a c j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

3 Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc - 0-2-3-4-5-6-7-8-9-10 a c -2 a -3 g -4 a -5 g -6 t -7 a -8 a -9 c -10 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

4 Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc - 0-2-3-4-5-6-7-8-9-10 a 10 -2-3-4-5-6-7-8 c -2 a -3 g -4 a -5 g -6 t -7 a -8 a -9 c -10 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

5 Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc - 0-2-3-4-5-6-7-8-9-10 a 10 -2-3-4-5-6-7-8 c -20210-2-3-4-5-6 a -3 g -4 a -5 g -6 t -7 a -8 a -9 c -10 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1

6 Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc - 0-2-3-4-5-6-7-8-9-10 a 10 -2-3-4-5-6-7-8 c -20210-2-3-4-5-6 a -313210 -2-3-4 g -20223210-2 a -5-313221210 g -6-2 02433210 t -7-3 1354332 a -8-4 -20243543 a -9-5 -3133443 c -10-6-4 -202233 5 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1 Optimal score

7 Global Alignment: Dynamic Progamming Table s 1 : acagagtaac s 2 : acaagtgatc -acAagtgatc - 0-2-3-4-5-6-7-8-9-10 a 10 -2-3-4-5-6-7-8 c -20210-2-3-4-5-6 a -313210 -2-3-4 g -20223210-2 a -5-313221210 g -6-2 02433210 t -7-3 1354332 a -8-4 -20243543 a -9-5 -3133443 c -10-6-4 -202233 5 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1 Optimal score

8 Global Alignment: Dynamic Progamming Table -acAagtgatc - 0-2-3-4-5-6-7-8-9-10 a 10 -2-3-4-5-6-7-8 c -20210-2-3-4-5-6 a -313210 -2-3-4 g -20223210-2 a -5-313221210 g -6-2 02433210 t -7-3 1354332 a -8-4 -20243543 a -9-5 -3133443 c -10-6-4 -202233 5 j s2s2 i s1s1 Scores: match=1, mismatch=-1, gap=-1 Optimal score Match or mismatch Insertion Deletion s 1 : acagagtaac s 2 : acaagtgatc


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