并行算法概述. 目录 1. 并行计算模型 2. 并行算法的基本设计技术 2 Von Neumann Model 3.

并行算法概述

目录 1. 并行计算模型 2. 并行算法的基本设计技术 2

Von Neumann Model 3

Instruction Processing 4 Decode instruction Evaluate address Fetch operands from memory Execute operation Store result Fetch instruction from memory

Parallel Computing Model Computing model – Bridge between SW and HW general purpose HW, scalable HW transportable SW – Abstract architecture for algorithm development – Ex) PRAM, BSP, LogP 5

Parallel Programming Model What programmer uses in coding applications? – Specifies communication and synchronization – Communication primitives exposed to user-level realizes the programming model – Ex) Uniprocessor, Multiprogramming, Data parallel, message-passing, shared-address-space 6

Aspects of Parallel Processing 7 Algorithm developerApplication developer Interconnection Network Memory PPPP PPPP PPPP PPPP Multiprocessors Parallel computing modelParallel programming model System programmer Architecture designer 3 4 2 1 Middleware

Parallel Computing Models PRAM – Parallel Random Access Memory – A set of p processors – Global shared memory Each processor can access any memory location in one time step – Globally synchronized Executing same program in lockstep 8

Illustration of PRAM 9 P1P2P3Pp Shared Memory CLK P processors connected to a single shared memory Each processor has a unique index. Single program executed in MIMD mode

Features Model architecture – Synchronized RAM with common clock, but not SIMD operation: MIMD – No local memory in each RAM – One global shared memory single address space architecture – Synchronization, communication, parallelism overhead are zero. 10

Features (Cont ’ d) Operations per step – Read/write a word from/to the memory – Local operation – An instruction could perform the following three operations in one cycle Fetch one or two words from the memory as operands Perform an arithmetic/logic operation Store the result back in memory 11

Problems with PRAM Inaccurate description of real-world parallel systems – Unaccounted costs Latency, bandwidth, non-local memory access, memory access contention issues, synchronization costs, etc Algorithms perceived to work well in PRAM may have poor performance in practice 12

PRAM Variants Variants arise to model some of these costs Each introduces some practical aspect of machine – Gives algorithm designer better idea for optimization Variants can be grouped into 4 categories – Memory access – Synchronization – Latency – Bandwidth 13

Memory Access Impractical to have concurrent read and write to same memory location – Contention issues CRCW PRAM – CPRAM-CRCW(Common PRAM-CRCW) ：仅允许写入相同数据 – PPRAM-CRCW(Priority PRAM-CRCW) ：仅允许优先级最高的处理器写入 – APRAM-CRCW(Arbitrary PRAM-CRCW) ：允许任意处理器自由写入 EREW or CREW PRAM QRQW (queue-read, queue-write ) – Expensive Multiple ports required for concurrent access maybe prohibitively expensive. 14

Synchronization Standard PRAM globally synchronized Standard PRAM model do not charge a cost for synchronization Unrealistic! Synchronization is necessary and expensive in practical parallel systems Variants model cost of synchronization – APRAM (asynchrony PRAM ): 每个处理器有其局部存储器、局部时钟、局部程序；无全局时钟，各处理器异步执行；处理器通过 SM 进行通讯；处理器间依赖关系，需在并行程序中显式地加入同步路障 – XPRAM (bulk synchronous PRAM, also known as BSP model) – Provides an incentive for algorithm designers to synchronize only when necessary 15

Synchronization (cont.) – BPRAM (Block-Parallel RAM) assumes n nodes, each containing a processor and a memory module, interconnected by a communication medium. A computation is a sequence of phases, called supersteps: in one superstep, each processor can execute operations on data residing in the local memory; send messages; execute a global synchronization instruction. Charge L units to access 1 st message and b units for each subsequent contiguous block 16

Latency Standard PRAM assumes unit-cost for non-local memory access In practice, non-local memory access has severe effect on performance PRAM variant – LPRAM (Local-memory PRAM) A set of nodes each with a processor and a local memory; the nodes can communicate through a globally shared memory. Two types of steps are defined and separately accounted for: computation steps, where each processor performs one operation on local data, and communication steps, where each processor can write, and then read a word from global memory Charge a cost of L units to access global memory 17

Bandwidth Standard PRAM assumes unlimited bandwidth In practice, bandwidth is limited PRAM Variant – DRAM (Distribution random access machine) 2 level memory hierarchy Access to global memory is charged a cost based on possible data congestion – PRAM(m) Global memory segmented into modules Any given step, only m memory accesses can be serviced 18

Other Distributed Models Distributed Memory Model – No global memory – Each processor associated with some local memory Postal Model – Processor sends request for non-local memory – Instead of stalling, it continues working while data is en-route 19

Network Models Focus on impact of topology of communications network Early focus of parallel computation Distributed Memory Model? Cost of remote memory access is a function of both topology and the access pattern Provides incentives for efficient – Data mappings – Communications routing 20

LogP Model design strongly influenced by trends in parallel computer design Model of a distributed memory multiprocessor Processors communicate via point to point messages Attempts to capture important bottleneck of parallel machines 21

LogP Specifies performance characteristics of communication network. – Provide incentive for clever data placement – Illustrates importance of balanced communication 22

Parallel Machine Trends Machine organization for most parallel machines is similar – A collection of complete computers Microprocessor Cache memory Sizable DRAM memory – Connected by robust communications network No single programming methodology is dominant 23

Other considerations Processor Count – Number of nodes relative to price of most expensive supercomputer / cost of node Communication Interval lags far behind processor memory bandwidth Presence of adaptive routing and fault-recovery networking systems Affects algorithm design – Parallel algorithms developed with large number of data elements per processor – Attempts to exploit network topology or processor count is not very robust 24

Model Parameters Latency (L) – Delay incurred in communicating a message from source to destination Hop count and Hop delay Communication Overhead (o) – Length of time a processor is engaged in sending or receiving a message Node overhead for processing a send or receive Communication bandwidth (g) – Minimum time interval between messages Processor count (P) – Processor count 25

LogP Model 26 sender receiver o L g o t

Bulk Synchronous Parallel Bulk Synchronous Parallel(BSP) – P processors with local memory – Router – Facilities for periodic global synchronization Every l steps – Models Bandwidth limitations Latency Synchronization costs – Does not model Communication overhead Processor topology 27

BSP Computer Distributed memory architecture 3 components – Node Processor Local memory – Router (Communication Network) Point-to-point, message passing (or shared variable) – Barrier synchronizing facility All or subset 28

Illustration of BSP 29 Communication Network (g) P M P M P M Node (w)Node Barrier (l)

Three Parameters w parameter – Maximum computation time within each superstep – Computation operation takes at most w cycles. g parameter – # of cycles for communication of unit message when all processors are involved in communication - network bandwidth – h The maximum number of incoming or outgoing messages for a superstep – Communication operation takes gh cycles. l parameter – Barrier synchronization takes l cycles. 30

BSP Program A BSP computation consists of S super steps. A superstep is a sequence of steps followed by a barrier synchronization. Superstep – Any remote memory accesses take effect at barrier - loosely synchronous 31

BSP Program 32 Superstep 1 Superstep 2 Barrier P1P2P3P4 Computation Communication

Model Survey Summary No single model is acceptable! Between models, subset of characteristics are focused in majority of models – Computational Parallelism – Communication Latency – Communication Overhead – Communication Bandwidth – Execution Synchronization – Memory Hierarchy – Network Topology 33

Computational Parallelism Number of physical processors Static versus dynamic parallelism Should number of processors be fixed? – Fault-recovery networks allow for node failure – Many parallel systems allow incremental upgrades by increasing node count 34

Latency Fixed message length or variable message length? Network topology? Communication Overhead? Contention based latency? Memory hierarchy? 35

Bandwidth Limited resource With low latency – Tendency for bandwidth abuse by flooding network 36

Synchronization Ability to solve a wide class of problems require asynchronous parallelism Synchronization achieved via message passing Synchronization as a communication cost 37

Unified Model? Difficult – Parallel machines are complicated – Still evolving – Different users from diverse disciplines Requires a common set of characteristics derived from needs of different users Again need for balance between descriptivity and prescriptivity 38

Algorithms and Concurrency Introduction to Parallel Algorithms – Tasks and Decomposition – Processes and Mapping Decomposition Techniques – Recursive Decomposition – Data Decomposition – Exploratory Decomposition – Hybrid Decomposition Characteristics of Tasks and Interactions – Task Generation, Granularity, and Context – Characteristics of Task Interactions. 39

Concurrency and Mapping Mapping Techniques for Load Balancing – Static and Dynamic Mapping Methods for Minimizing Interaction Overheads – Maximizing Data Locality – Minimizing Contention and Hot-Spots – Overlapping Communication and Computations – Replication vs. Communication – Group Communications vs. Point-to-Point Communication Parallel Algorithm Design Models – Data-Parallel, Work-Pool, Task Graph, Master-Slave, Pipeline, and Hybrid Models 40

Preliminaries: Decomposition, Tasks, and Dependency Graphs The first step in developing a parallel algorithm is to decompose the problem into tasks that can be executed concurrently A given problem may be decomposed into tasks in many different ways Tasks may be of same, different, or even interminate sizes A decomposition can be illustrated in the form of a directed graph with nodes corresponding to tasks and edges indicating that the result of one task is required for processing the next. Such a graph is called a task dependency graph 41

Example: Multiplying a Dense Matrix with a Vector 42 Computation of each element of output vector y is independent of other elements. Based on this, a dense matrix-vector product can be decomposed into n tasks. The figure highlights the portion of the matrix and vector accessed by Task 1. Observations: While tasks share data (namely, the vector b ), they do not have any control dependencies - i.e., no task needs to wait for the (partial) completion of any other. All tasks are of the same size in terms of number of operations. Is this the maximum number of tasks we could decompose this problem into?

Example: Database Query Processing Consider the execution of the query: MODEL = ``CIVIC'' AND YEAR = 2001 AND (COLOR = ``GREEN'' OR COLOR = ``WHITE) on the following database: ID#ModelYearColorDealerPrice 4523Civic2002BlueMN$18,000 3476Corolla1999WhiteIL$15,000 7623Camry2001GreenNY$21,000 9834Prius2001GreenCA$18,000 6734Civic2001WhiteOR$17,000 5342Altima2001GreenFL$19,000 3845Maxima2001BlueNY$22,000 8354Accord2000GreenVT$18,000 4395Civic2001RedCA$17,000 7352Civic2002RedWA$18,000 43

Example: Database Query Processing The execution of the query can be divided into subtasks in various ways. Each task can be thought of as generating an intermediate table of entries that satisfy a particular clause. 44 Decomposing the given query into a number of tasks. Edges in this graph denote that the output of one task is needed to accomplish the next.

Example: Database Query Processing Note that the same problem can be decomposed into subtasks in other ways as well. 45 An alternate decomposition of the given problem into subtasks, along with their data dependencies. Different task decompositions may lead to significant differences with respect to their eventual parallel performance.

Granularity of Task Decompositions The number of tasks into which a problem is decomposed determines its granularity. Decomposition into a large number of tasks results in fine- grained decomposition and that into a small number of tasks results in a coarse grained decomposition. 46 A coarse grained counterpart to the dense matrix-vector product example. Each task in this example corresponds to the computation of three elements of the result vector.

Degree of Concurrency The number of tasks that can be executed in parallel is the degree of concurrency of a decomposition. Since the number of tasks that can be executed in parallel may change over program execution, the maximum degree of concurrency is the maximum number of such tasks at any point during execution. The average degree of concurrency is the average number of tasks that can be processed in parallel over the execution of the program. The degree of concurrency increases as the decomposition becomes finer in granularity and vice versa. 47

Critical Path Length A directed path in the task dependency graph represents a sequence of tasks that must be processed one after the other. The longest such path determines the shortest time in which the program can be executed in parallel. The length of the longest path in a task dependency graph is called the critical path length. 48

Critical Path Length Consider the task dependency graphs of the two database query decompositions: 49 What are the critical path lengths for the two task dependency graphs? How many processors are needed in each case to achieve this minimum parallel execution time? What is the maximum degree of concurrency?

Task Interaction Graphs Subtasks generally exchange data with others in a decomposition. – For example, even in the trivial decomposition of the dense matrix-vector product, if the vector is not replicated across all tasks, they will have to communicate elements of the vector. The graph of tasks (nodes) and their interactions/data exchange (edges) is referred to as a task interaction graph. Note that task interaction graphs represent data dependencies, whereas task dependency graphs represent control dependencies. 50

Task Interaction Graphs: An Example Consider the problem of multiplying a sparse matrix A with a vector b. The following observations can be made: 51  As before, the computation of each element of the result vector can be viewed as an independent task.  Unlike a dense matrix-vector product though, only non-zero elements of matrix A participate in the computation.  If, for memory optimality, we also partition b across tasks, then one can see that the task interaction graph of the computation is identical to the graph of the matrix A (the graph for which A represents the adjacency structure).

Limits on Parallel Performance It would appear that the parallel time can be made arbitrarily small by making the decomposition finer in granularity. There is an inherent bound on how fine the granularity of a computation can be. – For example, in the case of multiplying a dense matrix with a vector, there can be no more than (n 2 ) concurrent tasks. Concurrent tasks may also have to exchange data with other tasks. This results in communication overhead. The tradeoff between the granularity of a decomposition and associated overheads often determines performance bounds. 52

Limits on Parallel Performance (cont.) Example: Consider the sparse matrix-vector product example from previous foil. Assume that each node takes unit time to process and each interaction (edge) causes an overhead of a unit time. Viewing node 0 as an independent task involves a useful computation of one time unit and overhead (communication) of three time units. Now, if we consider nodes 0, 4, and 5 as one task, then the task has useful computation totaling to three time units and communication corresponding to four time units (four edges). Clearly, this is a more favorable ratio than the former case. 53

Processes and Mapping In general, the number of tasks in a decomposition exceeds the number of processing elements available. For this reason, a parallel algorithm must also provide a mapping of tasks to processes. Note: We refer to the mapping as being from tasks to processes, as opposed to processors. This is because typical programming APIs, as we shall see, do not allow easy binding of tasks to physical processors. Rather, we aggregate tasks into processes and rely on the system to map these processes to physical processors. We use processes, not in the UNIX sense of a process, rather, simply as a collection of tasks and associated data. 54

Processes and Mapping Appropriate mapping of tasks to processes is critical to the parallel performance of an algorithm. Mappings are determined by both the task dependency and task interaction graphs. Task dependency graphs can be used to ensure that work is equally spread across all processes at any point (minimum idling and optimal load balance). Task interaction graphs can be used to make sure that processes need minimum interaction with other processes (minimum communication). 55

Processes and Mapping An appropriate mapping must minimize parallel execution time by: Mapping independent tasks to different processes. Assigning tasks on critical path to processes as soon as they become available. Minimizing interaction between processes by mapping tasks with dense interactions to the same process. Note: These criteria often conflict with each other. For example, a decomposition into one task (or no decomposition at all) minimizes interaction but does not result in a speedup at all! 56

Processes and Mapping: Example Mapping tasks in the database query decomposition to processes. These mappings were arrived at by viewing the dependency graph in terms of levels (no two nodes in a level have dependencies). Tasks within a single level are then assigned to different processes. 57

Algorithms and Concurrency Introduction to Parallel Algorithms – Tasks and Decomposition – Processes and Mapping Decomposition Techniques – Recursive Decomposition – Data Decomposition – Exploratory Decomposition – Hybrid Decomposition Characteristics of Tasks and Interactions – Task Generation, Granularity, and Context – Characteristics of Task Interactions. 58

Decomposition Techniques So how does one decompose a task into various subtasks? A set of commonly used techniques that apply to broad classes of problems. These include: recursive decomposition data decomposition exploratory decomposition speculative decomposition 59

Recursive Decomposition Generally suited to problems that are solved using the divide-and-conquer strategy. A given problem is first decomposed into a set of sub-problems. These sub-problems are recursively decomposed further until a desired granularity is reached. 60

Recursive Decomposition: Example A classic example of a divide-and-conquer algorithm on which we can apply recursive decomposition is Quicksort In this example, once the list has been partitioned around the pivot, each sub-list can be processed concurrently (i.e., each sub-list represents an independent subtask). This can be repeated recursively. 61

Recursive Decomposition: Example The problem of finding the minimum number in a given list can be fashioned as a divide-and-conquer algorithm. The following algorithm illustrates this. We first start with a simple serial loop for computing the minimum entry in a given list: 62 1. procedure SERIAL_MIN (A, n) 2. begin 3. min = A[0]; 4. for i := 1 to n − 1 do 5. if (A[i] < min) min := A[i]; 6. endfor; 7. return min; 8. end SERIAL_MIN

Recursive Decomposition: Example We can rewrite the loop as follows: 63 1. procedure RECURSIVE_MIN (A, n) 2. begin 3. if ( n = 1 ) then 4. min := A [0] ; 5. else 6. lmin := RECURSIVE_MIN ( A, n/2 ); 7. rmin := RECURSIVE_MIN ( &(A[n/2]), n - n/2 ); 8. if (lmin < rmin) then 9. min := lmin; 10. else 11. min := rmin; 12. endelse; 13. endelse; 14. return min; 15. end RECURSIVE_MIN

Recursive Decomposition: Example The code in the previous foil can be decomposed naturally using a recursive decomposition strategy. We illustrate this with the following example of finding the minimum number in the set {4, 9, 1, 7, 8, 11, 2, 12}. The task dependency graph associated with this computation is as follows: 64

Data Decomposition Identify the data on which computations are performed Partition this data across various tasks This partitioning induces a decomposition of the problem Data can be partitioned in various ways - this critically impacts performance of a parallel algorithm 65

Data Decomposition: Output Data Decomposition Often, each element of the output can be computed independently of others (but simply as a function of the input). A partition of the output across tasks decomposes the problem naturally. 66

Output Data Decomposition: Example Consider the problem of multiplying two n x n matrices A and B to yield matrix C. The output matrix C can be partitioned into four tasks as follows: 67 Task 1: Task 2: Task 3: Task 4:

Output Data Decomposition: Example A partitioning of output data does not result in a unique decomposition into tasks. For example, for the same problem as in previous foil, with identical output data distribution, we can derive the following two (other) decompositions: Decomposition I Decomposition II Task 1: C 1,1 = A 1,1 B 1,1 Task 2: C 1,1 = C 1,1 + A 1,2 B 2,1 Task 3: C 1,2 = A 1,1 B 1,2 Task 4: C 1,2 = C 1,2 + A 1,2 B 2,2 Task 5: C 2,1 = A 2,1 B 1,1 Task 6: C 2,1 = C 2,1 + A 2,2 B 2,1 Task 7: C 2,2 = A 2,1 B 1,2 Task 8: C 2,2 = C 2,2 + A 2,2 B 2,2 Task 1: C 1,1 = A 1,1 B 1,1 Task 2: C 1,1 = C 1,1 + A 1,2 B 2,1 Task 3: C 1,2 = A 1,2 B 2,2 Task 4: C 1,2 = C 1,2 + A 1,1 B 1,2 Task 5: C 2,1 = A 2,2 B 2,1 Task 6: C 2,1 = C 2,1 + A 2,1 B 1,1 Task 7: C 2,2 = A 2,1 B 1,2 Task 8: C 2,2 = C 2,2 + A 2,2 B 2,2 68

Output Data Decomposition: Example Consider the problem of counting the instances of given item-sets in a database of transactions. In this case, the output (item-set frequencies) can be partitioned across tasks. 69

Output Data Decomposition: Example From the previous example, the following observations can be made: – If the database of transactions is replicated across the processes, each task can be independently accomplished with no communication. – If the database is partitioned across processes as well (for reasons of memory utilization), each task first computes partial counts. These counts are then aggregated at the appropriate task. 70

Input Data Partitioning In many cases, this is the only natural decomposition because the output is not clearly known a-priori – e.g., the problem of finding the minimum in a list, sorting a given list, etc. A task is associated with each input data partition. The task performs as much of the computation with its part of the data. Subsequent processing combines these partial results. 71

Input Data Partitioning: Example In the database counting example, the input (i.e., the transaction set) can be partitioned. This induces a task decomposition in which each task generates partial counts for all item-sets. These are combined subsequently for aggregate counts. 72

Partitioning Input and Output Data Often input and output data decomposition can be combined for a higher degree of concurrency. For the itemset counting example, the transaction set (input) and itemset counts (output) can both be decomposed as follows: 73

Intermediate Data Partitioning Computation can often be viewed as a sequence of transformation from the input to the output data. In these cases, it is often beneficial to use one of the intermediate stages as a basis for decomposition. 74

Intermediate Data Partitioning: Example Let us revisit the example of dense matrix multiplication. We first show how we can visualize this computation in terms of intermediate matrices D. 75

Intermediate Data Partitioning: Example A decomposition of intermediate data structure leads to the following decomposition into 8 + 4 tasks: Stage I 76 Stage II Task 01: D 1,1,1 = A 1,1 B 1,1 Task 02: D 2,1,1 = A 1,2 B 2,1 Task 03: D 1,1,2 = A 1,1 B 1,2 Task 04: D 2,1,2 = A 1,2 B 2,2 Task 05: D 1,2,1 = A 2,1 B 1,1 Task 06: D 2,2,1 = A 2,2 B 2,1 Task 07: D 1,2,2 = A 2,1 B 1,2 Task 08: D 2,2,2 = A 2,2 B 2,2 Task 09: C 1,1 = D 1,1,1 + D 2,1,1 Task 10: C 1,2 = D 1,1,2 + D 2,1,2 Task 11: C 2,1 = D 1,2,1 + D 2,2,1 Task 12: C 2,,2 = D 1,2,2 + D 2,2,2

Intermediate Data Partitioning: Example The task dependency graph for the decomposition (shown in previous foil) into 12 tasks is as follows: 77

The Owner Computes Rule The Owner Computes Rule generally states that the process assigned a particular data item is responsible for all computation associated with it. In the case of input data decomposition: all computations that use the input data are performed by the process. In the case of output data decomposition: the output is computed by the process to which the output data is assigned. 78

Exploratory Decomposition In many cases, the decomposition of the problem goes hand-in-hand with its execution. These problems typically involve the exploration (search) of a state space of solutions. Problems in this class include a variety of discrete optimization problems, theorem proving, game playing, etc. 79

Exploratory Decomposition: Example A simple application of exploratory decomposition is in the solution to a 15 puzzle (a tile puzzle). We show a sequence of three moves that transform a given initial state (a) to desired final state (d). 80 Of-course, the problem of computing the solution, in general, is much more difficult than in this simple example.

Exploratory Decomposition: Example The state space can be explored by generating various successor states of the current state and to view them as independent tasks. 81

Speculative Decomposition In some applications, dependencies between tasks are not known a-priori. For such applications, it is impossible to identify independent tasks. There are generally two approaches to dealing with such applications: – conservative approaches, which identify independent tasks only when they are guaranteed to not have dependencies, and, – optimistic approaches, which schedule tasks even when they may potentially be erroneous. – Conservative approaches may yield little concurrency and optimistic approaches may require roll-back mechanism in the case of an error. 82

Speculative Decomposition: Example A classic example of speculative decomposition is in discrete event simulation. – The central data structure in a discrete event simulation is a time-ordered event list – Events are extracted precisely in time order, processed, and if required, resulting events are inserted back into the event list – Consider your day today as a discrete event system - you get up, get ready, drive to work, work, eat lunch, work some more, drive back, eat dinner, and sleep – Each of these events may be processed independently, however, in driving to work, you might meet with an unfortunate accident and not get to work at all – Therefore, an optimistic scheduling of other events will have to be rolled back 83

Speculative Decomposition: Example Another example is the simulation of a network of nodes (for instance, an assembly line or a computer network through which packets pass). The task is to simulate the behavior of this network for various inputs and node delay parameters (note that networks may become unstable for certain values of service rates, queue sizes, etc.). 84

Hybrid Decompositions 85 Often, a mix of decomposition techniques is necessary for decomposing a problem. Consider the following examples:  In quicksort, recursive decomposition alone limits concurrency. A mix of data and recursive decompositions is more desirable.  In discrete event simulation, there might be concurrency in task processing. A mix of speculative decomposition and data decomposition may work well  Even for simple problems like finding a minimum of a list of numbers, a mix of data and recursive decomposition works well

Algorithms and Concurrency Introduction to Parallel Algorithms – Tasks and Decomposition – Processes and Mapping – Processes Versus Processors Decomposition Techniques – Recursive Decomposition – Data Decomposition – Exploratory Decomposition – Hybrid Decomposition Characteristics of Tasks and Interactions – Task Generation, Granularity, and Context – Characteristics of Task Interactions. 86

Characteristics of Tasks Once a problem has been decomposed into independent tasks, the characteristics of these tasks critically impact choice and performance of parallel algorithms. Relevant task characteristics include: – Task generation – Task sizes – Size of data associated with tasks 87

Task Generation Static task generation: – Concurrent tasks can be identified a-priori. – Typical matrix operations, graph algorithms, image processing applications, and other regularly structured problems fall in this class. – These can typically be decomposed using data or recursive decomposition techniques. Dynamic task generation: – Tasks are generated as we perform computation. – A classic example of this is in game playing - each 15 puzzle board is generated from the previous one. – These applications are typically decomposed using exploratory or speculative decompositions. 88

Task Sizes Task sizes may be uniform (i.e., all tasks are the same size) or non-uniform. – Non-uniform task sizes may be such that they can be determined (or estimated) a-priori or not Examples in this class include discrete optimization problems, in which it is difficult to estimate the effective size of a state space. 89

Size of Data Associated with Tasks The size of data associated with a task may be small or large when viewed in the context of the size of the task. A small context of a task implies that an algorithm can easily communicate this task to other processes dynamically (e.g., the 15 puzzle). A large context ties the task to a process, or alternately, an algorithm may attempt to reconstruct the context at another processes as opposed to communicating the context of the task. 90

Characteristics of Task Interactions Tasks may communicate with each other in various ways. The associated dichotomy is: Static interactions: – The tasks and their interactions are known a-priori. These are relatively simpler to code into programs. Dynamic interactions: – The timing or interacting tasks cannot be determined a-priori. These interactions are harder to code, especially, as we shall see, using message passing APIs. 91

Characteristics of Task Interactions Regular interactions: – There is a definite pattern (in the graph sense) to the interactions. These patterns can be exploited for efficient implementation. Irregular interactions: – Interactions lack well-defined topologies. 92

Characteristics of Task Interactions: Example 93 A simple example of a regular static interaction pattern is in image dithering. The underlying communication pattern is a structured (2-D mesh) one as shown here:

Characteristics of Task Interactions: Example 94 The multiplication of a sparse matrix with a vector is a good example of a static irregular interaction pattern. Here is an example of a sparse matrix and its associated interaction pattern.

Characteristics of Task Interactions Interactions may be read-only or read-write. In read-only interactions, tasks just read data items associated with other tasks. In read-write interactions tasks read, as well as modily data items associated with other tasks. In general, read-write interactions are harder to code, since they require additional synchronization primitives. 95

Characteristics of Task Interactions Interactions may be one-way or two-way. A one-way interaction can be initiated and accomplished by one of the two interacting tasks. A two-way interaction requires participation from both tasks involved in an interaction. 96

Mapping Techniques Once a problem has been decomposed into concurrent tasks, these must be mapped to processes (that can be executed on a parallel platform). Mappings must minimize overheads. – Primary overheads are communication and idling. – Minimizing these overheads often represents contradicting objectives. – Assigning all work to one processor trivially minimizes communication at the expense of significant idling. 98

Mapping Techniques for Minimum Idling 99 Mapping must simultaneously minimize idling and load balance. Merely balancing load does not minimize idling.

Mapping Techniques for Minimum Idling Mapping techniques can be static or dynamic. Static Mapping – Tasks are mapped to processes a-priori – For this to work, we must have a good estimate of the size of each task. Even in these cases, the problem may be NP complete. Dynamic Mapping – Tasks are mapped to processes at runtime – This may be because the tasks are generated at runtime, or that their sizes are not known. Other factors that determine the choice of techniques include the size of data associated with a task and the nature of underlying domain. 100

Schemes for Static Mapping Mappings based on data partitioning. Mappings based on task graph partitioning. Hybrid mappings. 101

Mappings Based on Data Partitioning 102 We can combine data partitioning with the ‘ owner- computes ’ rule to partition the computation into subtasks. The simplest data decomposition schemes for dense matrices are 1-D block distribution schemes.

Block Array Distribution Schemes Block distribution schemes can be generalized to higher dimensions as well. 103

Block Array Distribution Schemes: Examples For multiplying two dense matrices A and B, we can partition the output matrix C using a block decomposition. For load balance, we give each task the same number of elements of C. (Note that each element of C corresponds to a single dot product.) 104

Data Sharing in Dense Matrix Multiplication 105

Cyclic and Block Cyclic Distributions If the amount of computation associated with data items varies, a block decomposition may lead to significant load imbalances. A simple example of this is in LU decomposition (or Gaussian Elimination) of dense matrices. 106

LU Factorization of a Dense Matrix1:2:3:4:5:6:7:8:9:10:11:12:13:14: 107 A decomposition of LU factorization into 14 tasks - notice the significant load imbalance.

Block Cyclic Distributions 108  Variation of the block distribution scheme that can be used to alleviate the load-imbalance and idling problems.  Partition an array into many more blocks than the number of available processes.  Blocks are assigned to processes in a round-robin manner so that each process gets several non- adjacent blocks.

Block-Cyclic Distribution for Gaussian Elimination 109 The active part of the matrix in Gaussian Elimination changes. By assigning blocks in a block-cyclic fashion, each processor receives blocks from different parts of the matrix.

Block-Cyclic Distribution 110  A cyclic distribution is a special case in which block size is one.  A block distribution is a special case in which block size is n/p, where n is the dimension of the matrix and p is the number of processes.

Graph Partitioning based Data Decomposition In case of sparse matrices, block decompositions are more complex. Consider the problem of multiplying a sparse matrix with a vector. The graph of the matrix is a useful indicator of the work (number of nodes) and communication (the degree of each node). In this case, we would like to partition the graph so as to assign equal number of nodes to each process, while minimizing edge count of the graph partition. 111

Partitioning the Graph of Lake Superior 112 Random Partitioning Partitioning for minimum edge-cut.

Mappings Based on Task Partitioning Partitioning a given task-dependency graph across processes. Determining an optimal mapping for a general task-dependency graph is an NP-complete problem. 113

Task Partitioning: Mapping a Binary Tree Dependency Graph 114 Example illustrates the dependency graph of one view of quick-sort and how it can be assigned to processes in a cube.

Hierarchical Mappings Sometimes a single mapping technique is inadequate. For example, the task mapping of the binary tree (quicksort) cannot use a large number of processors. For this reason, task mapping can be used at the top level and data partitioning within each level. 115

116 An example of task partitioning at top level with data partitioning at the lower level.

Schemes for Dynamic Mapping Dynamic mapping is sometimes also referred to as dynamic load balancing, since load balancing is the primary motivation for dynamic mapping. Dynamic mapping schemes can be centralized or distributed. 117

Centralized Dynamic Mapping Processes are designated as masters or slaves. When a process runs out of work, it requests the master for more work. When the number of processes increases, the master may become the bottleneck. To alleviate this, a process may pick up a number of tasks (a chunk) at one time. This is called Chunk scheduling. – Selecting large chunk sizes may lead to significant load imbalances as well. – A number of schemes have been used to gradually decrease chunk size as the computation progresses. 118

Distributed Dynamic Mapping Each process can send or receive work from other processes. This alleviates the bottleneck in centralized schemes. There are four critical questions: – how are sensing and receiving processes paired together – who initiates work transfer – how much work is transferred – when is a transfer triggered? Answers to these questions are generally application specific. 119

Minimizing Interaction Overheads Maximize data locality – Where possible, reuse intermediate data. Restructure computation so that data can be reused in smaller time windows. Minimize volume of data exchange – There is a cost associated with each word that is communicated Minimize frequency of interactions – There is a startup cost associated with each interaction Minimize contention and hot-spots – Use decentralized techniques, replicate data where necessary. 121

Minimizing Interaction Overheads (continued) Overlapping computations with interactions – Use non-blocking communications, multithreading, and prefetching to hide latencies. Replicating data or computations. Using group communications instead of point- to-point primitives. Overlap interactions with other interactions. 122

Parallel Algorithm Models An algorithm model is a way of structuring a parallel algorithm by selecting a decomposition and mapping technique and applying the appropriate strategy to minimize interactions. Data Parallel Model – Tasks are statically (or semi-statically) mapped to processes and each task performs similar operations on different data. Task Graph Model – Starting from a task dependency graph, the interrelationships among the tasks are utilized to promote locality or to reduce interaction costs. 124

Parallel Algorithm Models (continued) Master-Slave Model – One or more processes generate work and allocate it to worker processes. This allocation may be static or dynamic. Pipeline / Producer-Comsumer Model – A stream of data is passed through a succession of processes, each of which perform some task on it. Hybrid Models – A hybrid model may be composed either of multiple models applied hierarchically or multiple models applied sequentially to different phases of a parallel algorithm. 125

并行算法概述. 目录 1. 并行计算模型 2. 并行算法的基本设计技术 2 Von Neumann Model 3.

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并 行 算 法 概述. 目录 1. 并行计算模型 2. 并行算法的基本设计技术 2 Von Neumann Model 3.

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并行算法概述. 目录 1. 并行计算模型 2. 并行算法的基本设计技术 2 Von Neumann Model 3.

Presentation on theme: "并行算法概述. 目录 1. 并行计算模型 2. 并行算法的基本设计技术 2 Von Neumann Model 3."— Presentation transcript: