1. Immunology

2. Antigens u Some chemical that creates immune response u Most are proteins or large polysaccharides from a foreign organism. u Microbes: Capsules, cell walls, toxins, viral capsids, flagella, etc. u Nonmicrobes: Pollen, egg white, red blood cell surface molecules, serum proteins, and surface molecules from transplanted tissue.

3. Antigens Epitope: u Small part of an antigen that interacts with an antibody. 10-12 amino acids u Any given antigen may have several epitopes. u Each epitope is recognized by a different antibody.

4. Epitopes: Antigen Regions that Interact with Antibodies

5. Antibodies u Proteins that recognize and bind to a particular antigen with very high specificity. u Made in response to exposure to the antigen. u One virus or microbe may have several antigenic determinant sites, to which different antibodies may bind. u Each antibody has at least two identical sites that bind antigen: Antigen binding sites. u Belong to a group of serum proteins called immunoglobulins (Igs).

6. Antibody Structure u Monomer: A flexible Y-shaped molecule with four protein chains: u 2 identical light chains u 2 identical heavy chains u Variable Regions: Two sections at the end of Y’s arms. Contain the antigen binding sites (Fab). Identical on the same antibody, but vary from one antibody to another. u Constant Regions: Stem of monomer and lower parts of Y arms. u Fc region: Stem of monomer only. Important because they can bind to complement or cells.

7. Antibody Structure

8. How Do B Cells Produce Antibodies? u B cells develop from stem cells in the bone marrow of adults (liver of fetuses). u After maturation B cells migrate to lymphoid organs (lymph node or spleen). u Clonal Selection: When a B cell encounters an antigen it recognizes, it is stimulated and divides into many clones called plasma cells, which actively secrete antibodies. u Each B cell produces antibodies that will recognize only one antigenic determinant.

9. Clonal Selection of B Cells is Caused by Antigenic Stimulation

10. Humoral Immunity Apoptosis u Programmed cell death (“Falling away”). u Human body makes 100 million lymphocytes every day. If an equivalent number doesn’t die, will develop leukemia. u B cells that do not encounter stimulating antigen will self-destruct and send signals to phagocytes to dispose of their remains. u Many virus infected cells will undergo apoptosis, to help prevent spread of the infection.

11. Humoral Immunity (Continued) Clonal Selection u Clonal Selection: B cells (and T cells) that encounter stimulating antigen will proliferate into a large group of cells. u Why don’t we produce antibodies against our own antigens? u Clonal Deletion: B and T cells that react against self antigens appear to be destroyed during fetal development. Process is poorly understood. u Autoimmune diseases like Lupus, Rheumatic fever, Rheumatoid arthritis occur when antibodies attack self

12. Central Role of Helper T Cells

13. Types of T cells (Continued) Cytotoxic T (Tc) Cells: Destroy target cells. Recognize antigens on the surface of all cells: Kill host cells that are infected with viruses or bacteria.Kill host cells that are infected with viruses or bacteria. Recognize and kill cancer cells.Recognize and kill cancer cells. Recognize and destroy transplanted tissue.Recognize and destroy transplanted tissue. F Release protein called perforin which forms a pore in target cell, causing lysis of infected cells. F Undergo apoptosis when stimulating antigen is gone.

14. Cytotoxic T Cells Lyse Infected Cells

15. Immunoglobulin n Heavy Chain – 110 amino acids long u 100 distinct V segments u 30 D segments u 6 J segments u Enzymes choose one V segment, one D segment and one J segment and fuse them together u 18,000 combinations in encoding antibody molecule u Splice this variable region to the constant region n Light Chain – 211 amino acids long u 10,000 combinations u Total of 180,000,000 distinct B cells n Fusion is sloppy, can create other variants

16. Relationship Between Cell-Mediated and Humoral Immunity 1. Antibody Production T-Dependent Antigens: u Antibody production requires assistance from T helper cells. u A macrophage cells ingest antigen and presents it to T H cell. u T H cell stimulates B cells specific for antigen to become plasma cells. u Antigens are mainly proteins on viruses, bacteria, foreign red blood cells, and hapten-carrier molecules.

17. Humoral Response to T Dependent Antigens

18. Overview of the Immune Response

19. immunoglobulins n http://www.rcsb.org/pdb/static.do?p=explorer/viewers/jmol.jsp?structureId=1IGT >1IGT:D|PDBID|CHAIN|SEQUENCE EVKLQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLY LQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW N SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPS VFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLD SDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHTTKSFSR >1IGT:B|PDBID|CHAIN|SEQUENCE EVKLQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLY LQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW N SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPS VFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLD SDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHTTKSFSR >1IGT:C|PDBID|CHAIN|SEQUENCE DIVLTQSPSSLSASLGDTITITCHASQNINVWLSWYQQKPGNIPKLLIYKASNLHTGVPSRFSGSGSGTGFTLTISSLQP EDIATYYCQQGQSYPLTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC >1IGT:A|PDBID|CHAIN|SEQUENCE DIVLTQSPSSLSASLGDTITITCHASQNINVWLSWYQQKPGNIPKLLIYKASNLHTGVPSRFSGSGSGTGFTLTISSLQP EDIATYYCQQGQSYPLTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC