ImAnno Gene List How to combine list of genes from ImAnno search tool through sieves (using ImAnno SQL query) Transcriptomic Expression (GscopeWebService) Diseases related genes (serialized stores) With Union, Intersection, AnotB, etc.
sieves Cochlea Sacculus Utriculus url Select Store cochlea sacculus utriculus other Select Disease Jax Ihr Sanger All ISH Annotation Intersection GenePaintGenes Information Intersection Transcriptomic Diseases
ImAnno Gene List Output cadre sieves Cochlea Sacculus Utriculus url action Union Inter AnotB BnotA organ key action Union Inter AnotB BnotA Select Store EGEcoch EGEsac EGEutri EGEother action Union Inter AnotB BnotA Select Disease Jax Ihr Sanger All What to display name,descript,entrez,ege,go FromSieves UnionInter AnotBnotA GenePaintgenes UnionInter AnotBnotA HtmlTable FromStore
ImAnno Gene List
GxDb Uploading interface How to offer to the user an uploading tool allowing to combine experiments, arraytypes, samples, organisms, genotype, individuals, etc. using and connecting existing data, creating new one or updating it.
GxDb Input Upload interface
Tricks and useful tools Store and Restore Works well as HTML form Allows to combine several pipeworks The user can create or extend Can be integrated in any.php page Can be called as a PHP function as function call as WebService
PipeWork ToDo list … Collapse parts Graphical interface Ajax requests Apply to other applications
Selector ! How to find the Experiments which were done with a given Organism and a set of Treatmentypes ? And for a Genotype and a Sample How to combine Experiments, RealExps, Sample, Arraytypes etc.
… use Selector ! An application of the pipeworks MultipleSelectFromListOf
Selector … select from left to right Select one or more lines in a column Press the orange button to update the connected columns right from here Go to the next column When all is updated press the big orange button
5 => 60, 61, 62 => 27, 28 and 11
11 => 5, 34, 37 (hourrah 5 is present ! )
Find the way …
Selector and PipeWork A Selector can contain PipeWorks (it is a PipeWork with special properties) Select, Press And press the output button to process A Selector can not yet be embedded in a PipeWork ??
Selector ToDo list … Graphical interface … any idea ? Customisable in size and display Ajax Apply to other applications Test it outside Genoret or Gx require_once, etc.