Presentation is loading. Please wait.

Presentation is loading. Please wait.

The Scarlet Runner Bean Genome: Contig 230613 By Eden Maloney.

Similar presentations


Presentation on theme: "The Scarlet Runner Bean Genome: Contig 230613 By Eden Maloney."— Presentation transcript:

1 The Scarlet Runner Bean Genome: Contig By Eden Maloney

2 CONTIG Part of Scarlet Runner Bean (Phaseolus coccineus) Genome 18, 403 base pairs Two Predicted Genes – Conserved Hypothetical Protein – Known from Soybean: Gylcine Max 2 possibly Repeats

3 FGENESH Length of Genes (bp) BLASTNTBLASTNBLASTPDescription Gene 13968e-736e bp 1.1 XP_ PREDICTED: microtubule associated monoxygenase, calponin and LIM domain containing 2 isoform 1 [Macaca mulatta] Gene e-53 6e bp 5e-15 EEF27784 conserved hypothetical protein [Ricinus communis] Gene e-23 5e bp 2e-09 EEF27117 conserved hypothetical protein [Ricinus communis] Gene e bp 6e-115 CAA33227 emb|CAA |emb|CAA | unnamed protein product [Glycine max] 416 6e Genescan GeneMark

4 Genescan GENESCAN Length of Genes (bp) BLASTNTBLASTNBLASTPDescription Gene No significant Results 9.3 EDK39880 hypothetical protein PGUG_03978 [Pichia guilliermondii ATCC 6260] Gene 29907e-855e bp 1e-45 XP_ predicted protein [Populus trichocarpa] Gene 34898e-365e bp 1e-09 EEF27117 conserved hypothetical protein [Ricinus communis] Gene 44891e-26 2e bp1e-08 XP_ predicted protein [Populus trichocarpa]

5 GeneMark GENEMARK Length of Proteins (aa) BLASTNTBLASTNBLASTPDescription Gene 1250NA 5e bp 0.65 AAD28219 cysteine aminopeptidase; PepC [Enterococcus faecium] Gene 294NA 2e bp ACB28472 polyprotein [Ananas comosus] Gene 385NA 2e bp No Significant Results N/A Gene 4305NA 2e bp 4.3 YP_ lysyl-tRNA synthetase [Methanococcus vannielii SB] Gene 5113NA 4e bp 5e-16 EEF27794 conserved hypothetical protein [Ricinus communis] Gene 6197NA 9e bp 2e-06 ABK28031 unknown [Arabidopsis thaliana] Gene 7160NA 7e-ll 555 bp 7e-10 XP_ multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] Gene 8170NA 5e bp 2e-07 EEF27421 conserved hypothetical protein [Ricinus communis] Gene 9231NA 2e bp 2.4 YP_ hypothetical protein Igni_0134 [Ignicoccus hospitalis KIN4/I] Gene 10521NA9e bp 5e-148 CAA33227 unnamed protein product [Glycine max]

6 Diagram of Predicted Genes Fgenesh Genescan GeneMark Repeat

7 Overlapping Predicted Genes Fgenesh Genescan GeneMark Repeat

8 REPEATS? Plant Repeat Database IdDescriptionE value MRSiTETN gi| |emb|AJ |M TR Medicago truncatula CACTA type transposable element, clone 70N13, sequence GRSiTETNOOT00004 gi|170080|nt Soybean transposable element tgm1 165 MRSiTETN gi| |emb|AJ |M TR Medicago truncatula CACTA type transposable element, clone 75I04 163


Download ppt "The Scarlet Runner Bean Genome: Contig 230613 By Eden Maloney."

Similar presentations


Ads by Google