We think you have liked this presentation. If you wish to download it, please recommend it to your friends in any social system. Share buttons are a little bit lower. Thank you!
Presentation is loading. Please wait.
Published byBarnaby Newman
Modified about 1 year ago
Pfam Pfam & DAS Rob Finn 26 th Feb 2007
Pfam Acknowledgements John Tate Roger Pettett Andreas Prlic Andy Jenkinson But takes data from community…..!
Pfam New Pfam Website!
Pfam New Pfam Website! DAS Enabled
Pfam What do we provide? Pfam Domains Active Sites Other sequence Features Alignments Alignment features
Pfam Pfam Alignment Client Motivation –Simple alignment client Not trying to reinvent Jalview –Markup alignment –Pfam alignments vary in size Paging
Pfam Pfam Alignment Client Example - combines alignment and features requests
Pfam Pfam Features Client Motivation –Include Other annotations Identify where we are missing domains –Reduce data duplication –Allow tailored views –Enrich single protein data in Pfam
Pfam Pfam Features Client
Pfam Other Datasets
Pfam What Code Base? Pfam is Perl orientated –Server ProServer (CPAN) –Client Bio::Das::Lite (CPAN) Bio::Pfam::Drawing –Break out?
Pfam What Can’t I Do (with Das)? Asynchronous requests –Return pfam_scan results via DAS Mapping experimental datasets to public datasets Serve Pfam Textual Annotation –SOAP implementation
Pfam What is Hard to Do? Large scale analyses Filter out rubbish! –But what is one man’s rubbish…. Requirement for stylesheet? Standard Graphics library?
Pfam What Worries Me? Data deluge –Make Views….? Other people serve Pfam data –Confusion…..? –Redundancy People always want more from clients
Pfam Thank you!
Pfam, DAS and the future Rob Finn DAS Workshop 2009.
DAS Current Situation and Future Developments Jonathan Warren DAS coordinator for the Sanger Institute
Introduction to DAS / State of the Union Tim Hubbard DAS developer workshop 10th March 2009 Wellcome Trust Genome Campus.
Andy Jenkinson, EBI An Introduction to DAS. Summary of Topics What is Data Integration? Problems in Data Integration An architectural overview of DAS.
DAS for Molecular Interactions Hagen Blankenburg.
Structural Biology and Biocomputing Programme 1 Osvaldo Graña, CNIO Distributed Annotation System (DAS) part I Osvaldo Graña VIII.
Jalview Visualising DAS annotation on Multiple Sequence Alignments 26 th February 2007 Andrew Waterhouse
Dasty2 DAS workshop th March Rafael Jimenez.
Fission Yeast Computing Workshop -1- Searching, querying, browsing downloading and analysing data using PomBase Basic PomBase Features Gene Page Overview.
Rafael C Jimenez DAS DAS Workshop 2012 February 27-29, 2012 Using DAS software, an introduction to some DAS implementations.
DAS Game DAS game Distributed Annotation System A game to settle down the concept of DAS Game cards available in:
W alkie Doggie is a web application that allows dog owners to help each other with their dog walks. It’s main feature is the walkies, which are the user’s.
The Protein Identifier Cross-Reference (PICR) service.
Presented By: Ayelet Birnbaum Yael Kazaz Supervisor: Viktor Kulikov 07/05/12.
Ensembl DAS and Ensembl The 7 year itch!. Ensembl DAS and Ensembl The 7 year itch! A brief history DAS ist gut Issues Some proposals.
(ITI310) By Eng. BASSEM ALSAID SESSIONS 10: Internet Information Services (IIS)
EBI is an Outstation of the European Molecular Biology Laboratory. DAS implementations Bernat Gel 01/03/11.
Human features are those things created by man.
DAP4 James Gallagher & Ethan Davis OPeNDAP and Unidata.
The Internet Useful Definitions and Concepts About the Internet.
Update on the DAS Registry DAS Workshop 2011 Jonathan Warren.
EBI is an Outstation of the European Molecular Biology Laboratory. easyDAS Automatic DAS server creation Bernat Gel Universitat Politècnicade Catalunya.
Andy Jenkinson, EBI The DAS Protocol. Summary of Topics Technical overview Principles of communication Pros and cons DAS capabilities.
Orthology & Paralogy Alignment & Assembly Alastair Kerr Ph.D. [many slides borrowed from various sources]
Web Server Architecture/Hosting Capstone Project2 Name-ASFAQUE KHAN Regno
DEPARTMENT OF INFORMATION STUDIES Andy Dawson LIS1510 Library and Archives Automation Issues Further features of XHTML – Stylesheets and CSS Andy Dawson.
World Wide Web “WWW”, "Web" or "W3" What is WORLD WIDE WEB? Background. Fundamental concepts. Internet and World wide web? Growth Examples WWW Architecture.
Protein Annotation Ontology The BioSapiens Virtual Institute for Genome Annotations Janet Thornton & Gabby Reeves AFP/BioSapiens Vienna: July 07.
A component- and message-based architectural style for GUI software Richard N. Taylor et al. IEEE Transactions on Software Engineering, Vol.22, No.6, June.
Enlargement Simple scale factors. Find the scale factor and the missing length ?
Does Ajax suck? CS575 Spring 2007 Chanwit Suebsureekul.
IBM User Technology March 2004 | Dynamic Navigation in DITA © 2004 IBM Corporation Dynamic Navigation in DITA Erik Hennum and Robert Anderson.
Universiti Utara Malaysia Chapter 3 Introduction to ASP.NET 3.5.
DAS Advance Search and its prototype implementation in MyDas Gustavo Adolfo Salazar Orejuela Supervised by: Nicola Mulder Henning Hermjakob DAS workshop.
Topics in this presentation: The Web and how it works Difference between Web pages and web sites Web browsers and Web servers HTML purpose and structure.
Orthology & Paralogy Alignment & Assembly Alastair Kerr Ph.D. WTCCB Bioinformatics Core [many slides borrowed from various sources]
8 th Semester, Batch 2009 Department Of Computer Science SSUET.
Understanding AJAX Hype, Hope, Hurt and Help for the Web MJTS May 4th, 2006 _________________________ Terence Conklin, Conklin Systems
Searching the web Enormous amount of information –In 1994, 100 thousand pages indexed –In 1997, 100 million pages indexed –In June, 2000, 500 million pages.
Alastair Kerr, Ph.D. WTCCB Bioinformatics Core An introduction to DNA and Protein Sequence Databases.
Adding GO for Large Datasets COST Functional Modeling Workshop April, Helsinki.
Multimodal Alignment of Scholarly Documents and Their Presentations Bamdad Bahrani JCDL 2013 Submission Feb 2013.
Joe Hummel, PhD Dept of Mathematics and Computer Science Lake Forest College
MsSEM.comHelen M. Overland MsSEM.com The Canonical URL Tag How to Use the Canonical Tag to Avoid Duplicate Content Filters in Google, Yahoo & Live.
What year was the World Wide Web invented? 1989, by Tim Berners-Lee What year was the Internet developed? Can be traced back to 1958 — the year that.
WILLY’S STRAWBERRY FACTORY Website Proposal. WEBSITE CONTENT Photo galleries of the factory Directions via Google Maps embedded on the website Pricing.
LOGO 2 nd Project Design for Library Programs Supervised By Dr: Mohammed Mikii.
A Customisable Question and Answer Database Kate Lindsay.
The Pfam and MEROPS databases EMBO course 2004 Robert Finn
© 2017 SlidePlayer.com Inc. All rights reserved.