1. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 JATS and the Standards Ecosystem Presented by Bruce D. Rosenblum CEO Inera Incorporated JATS-Con, 1 April 2014

2. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 No Man Is An Island No man is an island, Entire of itself, Every man is a piece of the continent, A part of the main. If a clod be washed away by the sea, Europe is the less. As well as if a promontory were. As well as if a manor of thy friend's Or of thine own were: Any man's death diminishes me, Because I am involved in mankind, And therefore never send to know for whom the bell tolls; It tolls for thee. John Donne

3. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 Metadata Ecosystem JATS started as a markup solution JATS is now a workflow solution Integrates full text content & rich metadata Facilitates Metadata transmittal of submission End-to-end production activities Distribution of metadata to customers

4. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 JATS-Related Standards and Projects Supplemental Journal Article Materials ORCID PIE-J JAV CrossRef CrossMark CrossRef Metadata Services FundRef LicenseRef Open Access Metadata and Indicators CHORUS

5. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 Supplemental Journal Article Materials Joint NISO/NFAIS project (NISO RP-15-2013) Developed a Recommended Practice for publisher inclusion, handling, display, and preservation of supplemental journal article materials http://www.niso.org/workrooms/supplemental Extending JATS to include the NISO/NFAIS Recommended Practices for Online Supplemental Journal Article Materials Karen Gutzman and Kimberly A. Tryka. http://www.ncbi.nlm.nih.gov/books/NBK159734/

6. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 ORCID ORCID provides a persistent digital identifier that distinguishes you from every other researcher and, through integration in key research workflows such as manuscript and grant submission, supports automated linkages between you and your professional activities ensuring that your work is recognized http://orcid.org/ JATS support started with v 1.0,

7. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 XML to CrossRef ORCID Workflow: Reviewer Author DOI Notice to Reviewer Notice to Author Author Database Manuscript submission + Reviewer Database AUTHOR RECORD Review process Accepted Paper Production Process Published Paper Review request REVIEWER RECORD + Option to update ORCID record

8. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 PIE-J Presentation and Identification of E-Journals (PIE-J) NISO project Develop a Recommended Practice to provide guidance on the presentation of e-journals, particularly in the areas of title presentation, accurate use of the ISSN, and citation practices http://www.niso.org/workrooms/piej

9. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 PIE-J Example

10. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 JAV Journal Article Version (JAV) NISO Project Developed a set of recommended terms to be applied to iterations of an article's lifecycle to allow for actionable, unambiguous and reliable tools for publishers, librarians, aggregators, and indexers Current: Addendum for "proof" category http://www.niso.org/workrooms/jav_addendum/

11. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 CrossRef and JATS CrossMark CrossRef Metadata Services FundRef LicenseRef

12. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 CrossMark Corrections and retractions are growing CrossMark is a standard method to indicate when scholarly materials are changed post-publication, including corrections, updates, errata, retractions and withdrawals Latest news: standard vocabulary coming from CrossRef for correction type http://www.crossref.org/crossmark/index.html

13. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 CrossRef Metadata Services CrossRef Metadata Services is a suite of tools for authorized partners to collect metadata on a cross- publisher basis to streamline their own crawling, indexing, and linking services. JATS implications CrossRef deposit schema now supports MathML CrossRef deposit schema now supports JATS abstract model http://www.crossref.org/cms/index.html

14. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 FundRef More organizations (funders, publishers) want to track funding FundRef provides a standard way to report funding sources for published scholarly research. http://www.crossref.org/fundref/index.html http://www.crossref.org/fundref/fundref_registry.html See also tools at http://labs.crossref.org/http://labs.crossref.org/ JATS implications is a container element to hold both the name of an institution ( ) and any identifiers for that institution ( ), for example, an INSI or Ringgold ID Can be used in aff or funding-source

15. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 FundRef Workflow

16. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 CrossRef Registry This work was funded by an NIH cooperative agreement from the National Heart, Lung, and Blood Institute (grants U01HL077821, U01HL077826, U01HL077823). National Center for Research Resources (grant UL1RR025752), now at the National Center for Advancing Translational Sciences, provided laboratory testing This material was based on work supported by the Department of Veterans Affairs, Veterans Health Administration, Rehabilitation Research and Development Service, grant F4096R to Milton V. Icenogle, MD, Cardiology Section, Veterans Integrated Service Network 18, Albuquerque, New Mexico. This study was funded by Australian National Health and Medical Research Council (NHMRC) project grant 455209 This work was supported by the German Israel Foundation under Grant No. 1–2038.1114.07, the Israel Science Foundation under Grant No. 1380021, the Deborah Foundation, the Poznanski Foundation, and MAFAT

17. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 License Metadata Issues Key issue: Machine-readable License metadata for automated content re-use JATS-Con 2013/2014 paper Inconsistent XML as a Barrier to Reuse of Open Access Content http://www.ncbi.nlm.nih.gov/books/NBK159964/

18. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 LicenseRef

19. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 Open Access Metadata and Indicators Project to develop standardized bibliographic metadata and visual indicators to describe the accessibility of journal articles as well as potentially describe how "open" the item is. http://www.niso.org/workrooms/oami/ Key issue: Harmonize license and license and OA information JATS Implications and elements Likely outcome: new best practices, but watch the NISO site for more information

20. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 CHORUS The Clearinghouse for the Open Research of the United States (CHORUS) is a not-for-profit public-private partnership to increase public access to peer-reviewed publications that report on federally funded research. Provides a solution for agencies to comply with the OSTP memo on public access using public-private partnerships where possible and avoid extra-budgetary costs Builds on publishers’ existing infrastructure; utilizes current and developing tools, resources and protocols for identification, discovery, access, preservation and compliance (such as CrossRef, FundRef and ORCID) http://chorusaccess.org/

21. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 CHORUS Metadata Integration

22. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 Next Steps Review: Standards and metadata requirements Workflow for best metadata integration path Consider upgrade to JATS 1.1d1 Implement revised metadata workflow Include vital QA steps Provide rich metadata to customers CrossRef PubMed or PMC OA Funders Other

23. © Inera Inc., 2014. All Rights ReservedJATS-Con 2014 Questions? Bruce Rosenblum CEO Inera Inc. brosenblum@inera.com 617-932-1932