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Experiment one Examination of Bacteria. Visualizing Bacteria Staining is required to properly visualize bacteria Staining is required to properly visualize.

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Presentation on theme: "Experiment one Examination of Bacteria. Visualizing Bacteria Staining is required to properly visualize bacteria Staining is required to properly visualize."— Presentation transcript:

1 Experiment one Examination of Bacteria

2 Visualizing Bacteria Staining is required to properly visualize bacteria Staining is required to properly visualize bacteria

3 Microscopy Bright Field Microscopy

4 Three different objective lenses are commonly used Three different objective lenses are commonly used 10x: To scan the slide for specimens 10x: To scan the slide for specimens 40x: To view parasites, filamentous fungi 40x: To view parasites, filamentous fungi 100x: To observe single cells 100x: To observe single cells Total magnification= (objective lens magnification) X (ocular lens magnification) Total magnification= (objective lens magnification) X (ocular lens magnification)

5 Microscopy Bright Field Microscopy Note how light scatters via refraction Refractive index of air is lower than that of glass Loss of refracted light is minimized by applying mineral oil (same RI as glass)

6 Microscopy Dark Field Microscopy Creates contrast between the object and the surrounding field. Background is dark and the object is bright. Creates contrast between the object and the surrounding field. Background is dark and the object is bright. An annular stop ring permits light coming from the outside of the beam. An annular stop ring permits light coming from the outside of the beam. When light from the stop is deflected and deviated by the object can it be seen. When light from the stop is deflected and deviated by the object can it be seen. Advantageous for viewing thin bacteria Advantageous for viewing thin bacteria (Ie. Treponema pallidum) Disadvantage: internal structure is not as clearly visable compared to bright field Disadvantage: internal structure is not as clearly visable compared to bright field

7 Microscopy Dark Field Microscopy Light Field vs Dark Field Light Field vs Dark Field

8 Microscopy Phase-Contrast Microscopy Most of the detail of living cells is undetectable in bright field microscopy Most of the detail of living cells is undetectable in bright field microscopy –Little contrast exists between structures with similar transparency –Insufficient natural pigmentation. Organelles show wide variation in refractive index (the tendency of the materials to bend light) providing an opportunity to distinguish them with phase contrast mircoscopy Organelles show wide variation in refractive index (the tendency of the materials to bend light) providing an opportunity to distinguish them with phase contrast mircoscopy Internal features are more easily viewed Internal features are more easily viewed

9 Microscopy Phase-Contrast Microscopy

10 Microscopy Fluorescent Microscopy Organisms are stained with fluorescent dies (fluorochromes) and then viewed. Organisms are stained with fluorescent dies (fluorochromes) and then viewed. Fluorescent microscopes emit a shorter wavelength of light than in bright field microscopy. Fluorescent microscopes emit a shorter wavelength of light than in bright field microscopy. The short wavelength excites the fluorochromes, and they fluoresce. The short wavelength excites the fluorochromes, and they fluoresce. Allows for easier low magnification scanning. Allows for easier low magnification scanning. Bright object occurs against a dark background. Bright object occurs against a dark background.

11 Microscopy Fluorescent Microscopy Fluorescent vs Dark Field Fluorescent vs Dark Field

12 Microscopy Fluorescent Microscopy Different fluorescent stains can bind to different targets Different fluorescent stains can bind to different targets Digital merging with differential stains Digital merging with differential stains

13 Electron Microscopy Uses magnetic coils to direct a beam of electrons through the specimen onto a screen Uses magnetic coils to direct a beam of electrons through the specimen onto a screen Uses a very short wavelength, thus magnification and resolution is improved Uses a very short wavelength, thus magnification and resolution is improved Samples are stained/coated with metal ions to create contrast. Samples are stained/coated with metal ions to create contrast.

14 Electron Microscopy Transmission electron microscope Transmission electron microscope –Electrons pass through the specimen

15 Electron Microscopy Scanning Electron Microscope Scanning Electron Microscope –Electrons bounce off the surface of a specimen and create a 3D image.

16 How to use the oil immersion lens of microscopy The substage condenser to raise to the highest position The iris diaphragm fully opened To adjust the light entering the lens with low-power lens The oil immersion lens to be rotated into position The specimen to be put on the center of stage A drop of oil to be placed on the slide directly over the area to be viewed

17 Up the stage with the coarse adjustment knob, to let oil lens into the oil Looking into the ocular lens and down the stage slowly with the coarse adjustment knob until the specimen comes into focus Using the fine adjustment knob, to bring the specimen into sharp focus The oil immersion lens should be cleaned with lens paper after experiment

18 Examination Methods: Direct Examination India Ink Darkens the background rather than the cell Darkens the background rather than the cell Useful in detecting Cryptococcus capsules Useful in detecting Cryptococcus capsules –Capsule excludes ink

19 Morphological Observation Of Bacterial Cells S. aureus S. aureus

20 Morphological Observation Of Bacterial Cells E. coli E. coli

21 Morphological Observation Of Bacterial Cells V. choleriae V. choleriae Gram -ve Gram -ve

22 Morphological Observation Of Bacterial Cells Streptococcus pneumoniae Streptococcus pneumoniae

23 Morphological Observation Of Bacterial Cells Salmonella typhi Salmonella typhi

24 Morphological Observation Of Bacterial Cells Clostridium tetani Clostridium tetani Club shape is due to endospore production at one termini of the cell. Club shape is due to endospore production at one termini of the cell.

25 Staining of Bacteria PURPOSE : PURPOSE : To make bacteria more easily observable To make bacteria more easily observable To acquaint you with Gram stain To acquaint you with Gram stain MATERIALS: MATERIALS: –Simple stain –Gram stain –Acid-fast stain – Special stain Spore stain Spore stain Capsule stain Capsule stain Flagella stain Flagella stain Metachromatic granules stain. Metachromatic granules stain.

26 Gram stain purpose: purpose: differentiating bacteria differentiating bacteria MATERIALS : MATERIALS : –Slant cultures of and Escherichia coli and S.aureus (18 to 24 hours old) – Crystal violet, iodine solution, 95% alcohol, safranin –Microscope slides

27 Gram stain PROCEDURE: PROCEDURE: –Smear: size of a dime to form a thin film –Dry : air dry –Fix: through the warm air above the flame two or three times.

28 Crystal violet (primary staining) Lugol’s iodine (mordant staining) 95%ethyl alcohol (decolorization) Fuchsion red (counterstaining) Washing 1min Washing 30s Washing1min Blot dry with bibulous papers Observation with the oil immersion lens Results :Gram –positive blue color Gram-negative red color Washing30s Process of Gram’s Stain

29 Gram Staining In gram-positive bacteria, the crystal violet and iodine combine to form a larger molecule that precipitates out within the cell. In gram-positive bacteria, the crystal violet and iodine combine to form a larger molecule that precipitates out within the cell. Gram +ve bacteria have low lipid content Gram +ve bacteria have low lipid content Lipid is dissolved by alcohol Lipid is dissolved by alcohol The alcohol/acetone mixture then causes dehydration of the multilayered peptidoglycan The alcohol/acetone mixture then causes dehydration of the multilayered peptidoglycan –Thus causing the cell wall to trap the crystal violet- iodine complex within the cell.

30 Gram Staining Gram-negative bacteria have higher lipid contents Gram-negative bacteria have higher lipid contents The alcohol/acetone mixture, being a lipid solvent, dissolves the outer membrane of the cell wall and may also damage the cytoplasmic membrane to which the peptidoglycan is attached. The alcohol/acetone mixture, being a lipid solvent, dissolves the outer membrane of the cell wall and may also damage the cytoplasmic membrane to which the peptidoglycan is attached. The single thin layer of peptidoglycan is unable to retain the crystal violet-iodine complex and the cell is decolorized. The single thin layer of peptidoglycan is unable to retain the crystal violet-iodine complex and the cell is decolorized.

31 Gram Staining: Common Errors There are several factors that could result in a gram- positive organism staining gram-negatively: There are several factors that could result in a gram- positive organism staining gram-negatively: –The method and techniques used. Overheating during heat fixation, over decolorization with alcohol, and even too much washing with water between steps may result in gram-positive bacteria losing the crystal violet-iodine complex. –The age of the culture. Cultures more than 24 hours old may lose their ability to retain the crystal violet-iodine complex. –The organism itself. Some gram-positive bacteria are more able to retain the crystal violet-iodine complex than others. Therefore, one must use very precise techniques in gram staining and interpret the results with discretion. Therefore, one must use very precise techniques in gram staining and interpret the results with discretion.


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