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Biodiverse, a tool for the analysis of biological and other diversity Shawn Laffan BEES, UNSW
What does it do? Linked visualisations Spp list, geography, phylogeny, genetic Moving window analyses Cluster / region grower analyses Randomisations Matrix visualisation Arbitrarily complex spatial windows
The software It is free and open source ~50k lines of Perl code Discussion forum at groups.google.com/group/biodiverse-users
The remainder of the talk was a demonstration of the software.
What Biodiverse: spatial analysis of diversity using indices WebBiodiverse: a web layer TOLKIN: systematic and phylogenetic (tree of life) research.
Trees, taxonomy & location: mapping phylogeography using Biodiverse Dan Rosauer & Shawn Laffan University of New South Wales & Centre for Plant Biodiversity.
Geography What is it?. Geography is: “The study of people, places, and the environment.” “A science that deals with the description, distribution, and.
SPatial And Time Series Information Modelling (SPATSIM) Thokozani Mbhele Model developed by D Hughes.
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Biodiversity Part 2. Bellwork: Yesterday we talked about biodiversity. Explain how extinction and biodiversity are related.
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Biodiversity. Bellwork: What is extinction? Why are humans so worried about the extinction of organisms? 4 things I learned3 things I want to know more.
Adding Phylogeny to GIS-enabled Species Range and Distribution Analyses Jeffery Cavner, J.H. Beach, Aimee Stewart, CJ Grady
Tree of Life Introduction The Tree of Life (ToL) Web Project (http://www.tolweb.org/tree/) is an online collaborative effort to provide information about.
Spatially Assessing Model Error Using Geographically Weighted Regression Shawn Laffan Geography Dept ANU.
Geography Dictionary. Links Tributary: cation/encyclopedia/tributary/?ar_a=1
GIS in a nutshell Faris Alsuhail What is GIS? “A geographic information system (GIS) integrates hardware, software, and data for capturing, managing,
Web Links & Video Clips: New Tools For Teaching Fruit IPM Peter Jentsch Extension Associate – Entomology Mike Fargione Educator – Hudson Valley Regional.
University of Illinois at Urbana-Champaign. BeeSpace Project 5-year NSF-funded project Project Goals Develop open bioinformatics resources Support.
Reducing a Set Covering Matrix. S I T E S Cost Areas
USAID Biodiversity Code Biodiversity Conservation in Agriculture Symposium Punta Cana, Dominican Republic May 31 - June 2, 2006.
September 7, 2012 Ms. Edwards. What is biodiversity? Biological =relating to living organisms Diversity = variation The variability among living organisms.
MA 6.3 A food web identifies producers, consumers, and decomposers, and explains the transfer of energy through trophic levels. Relationships among organisms.
QUICKScan A Participatory Spatial Analysis Tool to Facilitate Policy Assessments Peter Verweij, Michiel van Eupen Geospatial world forum – policy/research.
Lynn English High School Ms. Mezzetti. 5.1 Explain how evolution is demonstrated by evidence from the fossil record, comparative anatomy, genetics,
Leptospirosis in Madagascar Mark Moseley PhD researcher Institute of Biological and Environmental Science University of Aberdeen
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OECD World Forum on Statistics, Knowledge and Policy Measuring and Fostering the Progress of Societies Istanbul, 29 June 2007 BIODIVERSITY.
Chapter 1, Section 3: Studying Life. Characteristics of Living Things A universal genetic code Grow and develop stimuli Respond to stimuli in their environment.
The design, construction and use of software tools to generate, store, annotate, access and analyse data and information relating to Molecular Biology.
EURISCO as a tool to assist in gap analysis of ex situ European CWR Sónia Dias Presented at the PGRForum Workshop 2: Threat and Conservation Assessment.
Conservation Biology and Restorative Ecology. What matters most in an ecosystem: BIODIVERSITY Genetic diversity Species diversity Ecosystem diversity.
California Science Content Standards Today's lecture and activity will cover the following content standards: 5d) Students know different kinds of organisms.
Northwest Power and Conservation Council Sep 12-13, Science Policy Exchange - Thursday Sessions - Sponsored by Northwest Power and Conservation Council.
Introduction to Geographic Information Systems GIS is a Spatial tool used to query spatial information investigate spatial problems communicate spatial.
Cluster Computing Applications for Bioinformatics Thurs., Aug. 9, 2007 Introduction to cluster computing Working with Linux operating systems Overview.
Visualization of AAG Paper Abstracts André Skupin Dept. of Geography University of New Orleans AAG Pittsburgh, April 5, 2000.
Federal Land Manager Environmental Database (FED) Overview and Update June 6, 2011 Shawn McClure.
BIOLOGY INTRODUCTION: THEMES in the STUDY of LIFE.
© Crown copyright Met Office An introduction to CDO, NCL and PRECIS utilities Kuala Lumpur, Malaysia, 8 th – 11 th November 2012.
Island biogeography II: the application Bio 415/615.
CGI vs ASP. CGI Model request Sends CGI to runs the script and returns HTML sends HTML back Script is stored in the script server.
Monte Carlo Methods and the Genetic Algorithm Applications and Summary John E. Nawn MAT 5900 April 5 th, 2011.
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