Presentation on theme: "Upload, Display and Analyze Your Data on the Gramene/Ensembl Genome Browser Sushma Naithani (Botany and Plant Pathology, Oregon State University, Corvallis,"— Presentation transcript:
Upload, Display and Analyze Your Data on the Gramene/Ensembl Genome Browser Sushma Naithani (Botany and Plant Pathology, Oregon State University, Corvallis, USA) firstname.lastname@example.org 01/13/2015 PAG 1
Users can Add Custom Tracks Salk T-DNA lines Uploaded from my laptop GFF file format EST alignments from non- model plants DAS: Distributed Annotation system Protocol for sharing 3 rd party data DAS Registry Methylome (Ecker) Uploaded from an URL BED file format GFF GTF BED BAM VCF bedGraph Gbrowse PSL WIG BigBed BigWig TrackHub 01/13/2015 PAG
10/25/2013 10 SNP and Transcriptome Data Display on Rice Genome Browser 1. SNP data for two rice varieties Pokkali-salinity tolerant and IR29-salinity. 2. Pokkali and IR29 Transcriptomes representing salinity response after 1 hr, 5 hrs and 24 hrs treatments. This data was generated in Pankaj Jaiswal’s lab, OSU.
16 Sign up for Gramene webinar 2015 at Outreach Booth #407 01/13/2015 PAG
SAB 2013 Gramene - Exploring Function Through Comparative Genomics and Network Analysis NSF IOS 1127112 Doreen Ware, PI (USDA ARS, CSHL) Kapeel Chougule, Yinping Jiao, Sunita Kumari, Vivek Kumar, Marcela K. Monaco, Andrew Olson, Joshua Stein, Jim Thomason, Peter van Buren, Sharon Wei, Bo Wang, Zhenyuan Lu Pankaj Jaiswal, Co-PI (OSU) Vindhya Amarasinghe, Justin Elser, Sushma Naithani, Justin Preece Paul Kersey & Helen Parkinson (EMBL-EBI) Dan Bolser, Arnaud Kerhornou, Eugene Kulesha, Dan Staines, Brandon Walts / Nuno Fonseca, Maria Keays, Robert Petryszak, Eleanor Williams Lincoln Stein (OICR) Robin Haw; Peter D’Eustachio (NYU); Guanming Wu; David Croft (EBI) Crispin Taylor (ASPB) Patty Lockhart 01/13/2015 PAG
Your consent to our cookies if you continue to use this website.