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Enabling Grids for E-sciencE INFSO-RI-508833 GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005 1 GPSA - Grid Protein Sequence Analysis on the.

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Presentation on theme: "Enabling Grids for E-sciencE INFSO-RI-508833 GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005 1 GPSA - Grid Protein Sequence Analysis on the."— Presentation transcript:

1 Enabling Grids for E-sciencE INFSO-RI GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/ GPSA - Grid Protein Sequence Analysis on the EGEE grid Christophe Blanchet Pôle BioInformatique de Lyon - PBIL Institut de Biologie et Chimie des Protéines IBCP – CNRS UMR 5086 Lyon-Gerland, France EgEE Conference 3, demo session, 20/04/2005, Athens

2 Enabling Grids for E-sciencE INFSO-RI GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/ Bioinformatic Resources on EGEE (Apr 2005) Protein analysis application –Sequence similarity: BLAST, SSEARCH, FASTA –Multiple Alignment:ClustalW, MultAlin –Protein site/signatures:PattInProt –Secondary Struct. Pred:Predator, Gor4, Simpa96 Data –Sequence Bank:SWISSPROT, TrEMBL –Pattern/Profile bank:PROSITE

3 Enabling Grids for E-sciencE INFSO-RI GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/ GPSA: protein sequence similarity

4 Enabling Grids for E-sciencE INFSO-RI GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/ GPSA Status New bioinformatic softwares integrated: –FASTA, BLAST, Multalin. Multiple jobs integrated to GPSA: –waiting for the multiple-job availibility of the submission process: one JDL for several jobs on same data/softwares Local file access: –testing complient SE/CE and managing data input of the BLAST algorithm. certificat GRID-FR –Christophe Blanchet, Rémi Mollon –Guinea pig: not all the site has the last CA cert packages (0.28) Security Percentage of success: 79,1 % of success


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