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Biological Databases Morten Nielsen BioSys, DTU. Different kinds of data DNA –NCBI GenBankNCBI GenBank –Organism specific databases Protein –UniProt SwissProt.

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Presentation on theme: "Biological Databases Morten Nielsen BioSys, DTU. Different kinds of data DNA –NCBI GenBankNCBI GenBank –Organism specific databases Protein –UniProt SwissProt."— Presentation transcript:

1 Biological Databases Morten Nielsen BioSys, DTU

2 Different kinds of data DNA –NCBI GenBankNCBI GenBank –Organism specific databases Protein –UniProt SwissProt TrEMBL –NCBINCBI

3 Different kinds of data Protein Structure –PDBPDB Expression Data –NCBI GeoNCBI Geo Epitopes –IEDBIEDB

4 PDB

5 IEDB Immune Epitope Database:

6 UniProt UniProt database

7 Data redundancy! Databases have non-biological redundancy This is problematic when training data- driven prediction methods –As you saw for PSSM construction Uniprot has a feature to remove redundancy (90% or 50%). How is this done? This and much more you will find out in the next episode of...


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