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Topology testing results. DNAP.freetree.nw A lake Q4 Q3 Constraint 0: ((Q3,Q4), the rest); Constraint 1: (lake,Q3), the rest); Constraint 2: (lake,Q4),

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Presentation on theme: "Topology testing results. DNAP.freetree.nw A lake Q4 Q3 Constraint 0: ((Q3,Q4), the rest); Constraint 1: (lake,Q3), the rest); Constraint 2: (lake,Q4),"— Presentation transcript:

1 Topology testing results

2 DNAP.freetree.nw A lake Q4 Q3 Constraint 0: ((Q3,Q4), the rest); Constraint 1: (lake,Q3), the rest); Constraint 2: (lake,Q4), the rest); Constraint 3: (lake,Q3,Q4), the rest); Fig 4 - DNA replication, recombination and repair

3 Prasinoviruses OLPV OLPV env environmental sequences Phaglob env env Moumou gene 316 Megavirus Mimivirus Mamavirus CroV Lausannevirus Marseillevirus l1 Invir l2 Invir q1 Parbu Eukaryotes D5hel.freetree.nw B DNAtopoII.freetree.nw C lake mimi Q lake1 lake2 Q Constraint 0: (lake,Q), the rest); Constraint 1: (lake,mimi), the rest); Constraint 0: (lake1,Q), the rest); Constraint 1: (lake2,Q), the rest); Fig 4 - DNA replication, recombination and repair

4 D RuvC.freetree.nw E YqaJ.freetree.nw Fig 4 - DNA replication, recombination and repair lake1 lake2 Q environmental sequences Phaglob env env OLPV OLPV environmental sequences l5 Ambti l5 Singr q3 Ectsi q3 Felsp CroV Mamavirus Mimivirus Megavirus Moumou gene q0 Ostvi Entomopoxviridae Prasinoviruses Lausannevirus Marseillevirus l1 Aedta l2 Wisir l2 Invir b1 Diapu Chordopoxviridae Chloroviruses 0.5 lake mimi Q3 Q4 Q1 Constraint 0: ((lake,mimi), the rest); Constraint 1: (lake,Q1), the rest); Constraint 2: (lake,Q3), the rest); Constraint 3: (lake,Q4), the rest); Constraint 0: (lake1,Q), the rest); Constraint 1: (lake2,Q), the rest);

5 RNApolA.freetree.nw RNApolB.freetree.nw Fig 5 – Transcription and RNA processing A B No topology testing

6 A2L.freetree.nw TFIIB_2.freetree.nw CD environmental sequences env Phaglob env env env env env OLPV OLPV env CroV Mamavirus Mimivirus Megavirus Moumou gene Eukaryotes 1.00 Lausannevirus Marseillevirus Prasinoviruses Chloroviruses 1.00 OLPV OLPV Phaglob env CroV env env Mamavirus Mimivirus Megavirus Moumou gene 374 Chloroviruses Coccolithovirus Phaeoviruses Prasinoviruses Marseillevirus Lausannevirus Asco/Iridoviridae environmental sequences Phycodnaviridae lake Q4 Q1 lake Q1 Q4 Constraint 0: (lake,Q1), the rest); Constraint 1: (lake,Q4), the rest); Constraint 0: (lake,Q1), the rest); Constraint 1: (lake,Q4), the rest); Fig 5 – Transcription and RNA processing

7 capping.freetree.nw A18hel.freetree.nw EF Phaglob env environmental sequences OLPV OLPV CroV Moumou gene 421 Megavirus Mamavirus Mimivirus q2 Emihu Prasinoviruses Chloroviruses Lausannevirus Marseillevirus Ec Cryho l4_Infsp E9 Ostta El Dappu Eukaryotes (Opisthokonta) Eukaryotes (Opisthokonta) Phycodnaviridae Fig 5 – Transcription and RNA processing lake Q env Phaglob OLPV OLPV env env CroV Mamavirus Mimivirus Megavirus Moumou gene 408 Mamavirus Mimivirus q3 Ectsi Chloroviruses Prasinoviruses Marseille/Iridoviridae c1 Afrsw Poxviridae Bacteria Bp Haloc Bp Stiau Ec Plavi El Phano Ea Entdi q2 Emihu Bf Paesp Bi Fibsu Archaea Ek Leiin Ek Trycr c1 Afrsw CroV OLPV environmental sequences Phycodnaviridae lake Q Constraint 0: (lake,Q), the rest);

8 RRlarge.freetree.nw RRsmall.freetree.nw Fig 6 - Nucleotide metabolism env Phaglob env env env env environmental sequences OLPV OLPV environmental sequences env env env CroV Moumou gene 497 Megavirus Mimivirus Mamavirus q3 Felsp q3 Ectsi Prasinoviruses env Chloroviruses env Ec Plavi Ec Crypa Ek Trybr Ek Leibr q2 Emihu Ec Parte Eukaryotes (plants) Ea Dicdi Bacteria Eukaryotes/Eukaryotic virues AB lake Q lake1 Q lake2 Constraint 0: (lake,Q), the rest); Constraint 0: (lake1,Q), the rest); Constraint 1: (lake2,Q), the rest);

9 A32.freetree.nw C Fig 7 lake1 Q3 lake2 Q4 Constraint 0: ((lake1,Q4), the rest); Constraint 1: (lake1,Q3), the rest); Constraint 2: (lake2,Q4), the rest); Constraint 3: (lake2,Q3), the rest);

10 riboIII.freetree.nwPCNA.freetree.nw Fig 8 AB OLPV OLPV env environmental sequences env env Phaglob env Mamavirus Mimivirus Moumou gene Megavirus CroV Prasinoviruses q3 Ectsi q3 Felsp Chloroviruses Marseillevirus Lausannevirus Chloroviruses q2 Emihu Eukaryotes env Phaglob env env env environmental sequences env OLPV OLPV env env CroV Mamavirus Mimivirus Megavirus Moumou gene 465 Phycodnaviridae (chloro-, prasinoviruses) Bacteria Asco/Iridoviridae Ae Metsm El Phaca Bacteria, Eukaryotes (plants) lake Q4 Q3 Q1 lake Q Constraint 0: (lake,Q), the rest); Constraint 0: (lake,Q1), the rest); Constraint 1: (lake,Q3), the rest); Constraint 2: (lake,Q4), the rest);


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