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Efficiently supports team-work by integrative data-centric knowledge-sharing platform Gao, Ge ( 高歌 ) Center for Bioinformatics, CBI ( 北京大学生物信息中心 ) 2009-10-19.

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Presentation on theme: "Efficiently supports team-work by integrative data-centric knowledge-sharing platform Gao, Ge ( 高歌 ) Center for Bioinformatics, CBI ( 北京大学生物信息中心 ) 2009-10-19."— Presentation transcript:

1 Efficiently supports team-work by integrative data-centric knowledge-sharing platform Gao, Ge ( 高歌 ) Center for Bioinformatics, CBI ( 北京大学生物信息中心 ) 2009-10-19

2 Center for Bioinformatics, Peking University Founded in 1996 as the first bioinformatics center in China Administratively located within College of Life Sciences Funded by Ministry of Science and Technology, Natural Science Foundation, and Ministry of Education Official national node of EMBnet in China 600m 2 of “dry” lab and 100m 2 of “wet” lab Strong hardware and software infrastructure

3 Seminar/training room 121-CPU IBM cluster Center for Bioinformatics Floor SUN servers CBI Graduate Students’ Office Life Science Building (CBI is on 6 th floor) Wet lab for bench work

4 First and Largest Online Bioinformatics Resource in China

5 Ten Millions of Hits per month 已去除来自本中心内部及搜索引擎的访问量

6 Users around the world

7 Expasy: Chinese Official Mirror

8

9 Plant Transcript Factor Database

10 类别物种学名转录因子数量 模式生物拟南芥 Arabidopsis thaliana2290 杨树 Populus trichocarpa2576 水稻 Oryza sativa (ssp. indica)2025 Oryza sativa (ssp. japonica)2384 小立碗藓 Physcomitrella patens1170 衣藻 Chlamydomonas reinhardtii205 谷类大麦 Hordeum vulgare618 玉米 Zea may764 高粱 Sorghum bicolor397 甘蔗 Saccharum officinarum1177 小麦 Triticum aestivum1127 水果苹果 Malus domestica1025 葡萄 Vitis vinifera867 甜橙 Citrus sinensis599 裸子植物火炬松 Pinus taeda950 云杉 Picea glauca440 经济作物棉花 Gossypium hirsutum1567 马铃薯 Solanum tuberosum1340 大豆 Glycine max1891 向日葵 Helianthus annuus513 番茄 Lycopersicon esculentum998 百脉根 Lotus japonicus457 苜蓿 Medicago truncatula1022

11 Weblab: your Lab on the Web

12 270+ Widely-used Bioinformatics Tools

13 Unified application interface for both local and remote applications Being compatible with SOAP-based Web service and Globus-based Grid services

14 Operators-based workflow engine

15 Seamless integrating various resources Web-service based protocol BioMart-compatible interface

16 Context-sensitive data workspaces Tag Comment

17 Effectively literature management

18 Team-work: Virtual Research Group

19 Sharing documents among collaborators Shared data

20 数据与文献的统一管理 用户定制标签( tag ) 用户批注 (comment) 用户间数据共享 基于文本挖掘的自动关联

21 WebLab as a Grid portal

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23 目前,网格门户已有来自世界各地的四千余个注册用 户, 完成了近九万项分析任务。 相关论文发表在 Nucle. Acid Research – 瑞典 Uppsala University 及中国农业科学院安装了 WebLab 系统 的分发版本用于教学及科研

24 Thanks for your attention!

25 Backup

26 Some more Research-Driven Online Services@CBI

27 Interactive UI for defining new workflow

28 基于 Web-service 定义标准化数据接口 以整合远程数据源

29 Weblab 为用户 提供了基于浏览 器的生物信息学 网络整合计算环 境。通过支持基 于以用户数据为 中心的工作模型, 用户无需关心底 层实现细节,即 可提交包含多个 计算任务的工作 流请求,完成复 杂的分析任务流 程。


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