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© 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 1 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary.

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Presentation on theme: "© 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 1 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary."— Presentation transcript:

1 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 1 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 1 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 1 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Enhancing Spotfire with the Power of R Charles Roosen (Mango Solutions) Difei Luo (TIBCO Software)

2 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 2 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 2 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 2 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Overview  What is Spotfire?  The Spotfire Platform  The Spotfire SDK  R Extensions for Spotfire  Motivation  Extension Types  Implementation Details

3 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 3 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 3 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 3 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level The Spotfire Platform

4 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 4 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 4 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 4 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level TIBCO Spotfire Enterprise Analytics overview Analysts Business Users IT & Developers Data Integration Security Integration App Integration Platform Extensibility

5 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 5 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 5 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 5 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level TIBCO Spotfire Professional – In-memory interactive analytics Explore data with multiple, linked visualizations From simple Bar charts to powerful statistics at the tip of your fingers Instantly share any analysis No separate publishing step Auto-generated dynamic filters Real-time, in-memory filtering on any field Intuitive, user-driven interface Completely interactive user experience Load data from multiple sources ODBC/OleDB access, TS As Information Links, Excel Spreadsheets, flat data files, …

6 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 6 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 6 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 6 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level TS Enterprise Analytics – Platform Overview

7 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 7 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 7 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 7 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Demo: Spotfire

8 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 8 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 8 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 8 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level The Spotfire SDK

9 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 9 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 9 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 9 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level What is the Spotfire SDK?  The TIBCO Spotfire platform has a software development kit (SDK) for configuring, automating, and extending the platform.  The SDK is used to create custom TIBCO Spotfire Extensions.  Extensions add features that from the end users perspective are virtually indistinguishable from the built-in features.  Extensions are implemented in C# using Visual Studio  Well documented API’s  Well designed architecture  Good examples on the Spotfire Technology Network

10 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 10 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 10 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 10 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Extension Types  TIBCO Spotfire Extension types include:  Data Reader: Import data from custom file, database, and web services data sources  Data Writer: Export data to custom file, database, and web services data sources  Calculation: Add custom aggregation, expression function, and statistical methods that automatically re-execute on data update events  Dialog Tool: Prompt users for input into custom application and document-level automation jobs  Control Panel: Collect user input from and display feedback to an always available custom control panel  Visualization Panel: Display custom charts, plots and other forms of presentation based on the current set of filtered and marked data  Automation Interface: Send and receive properties, events, and commands to and from an external application

11 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 11 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 11 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 11 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level R Extensions for Spotfire

12 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 12 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 12 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 12 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Motivation  R has a wealth of statistical techniques of value to Spotfire users  R core features  Bioconductor  PK modeling  Focus is on using R for statistical computation  R does the computation  Spotfire does the user interface, graphics, reporting, and automation  Why not just use S+?  R has functionality not available for S+, e.g. Bioconductor

13 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 13 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 13 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 13 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Extensions Implemented  Open R Data File  Load the first object in an “RData” file as a data.frame  Open R Script File  Execute an R script file creating a data.frame  Open From R Expression  Execute a one-liner expression creating a data.frame  R Column Calculation  Execute an R expression that creates a column  R Custom Expression  Execute an R expression computing a summary such as “mean()” or “mad()”  Create and Manage General R Calculations  Execute a block of R code creating a table

14 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 14 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 14 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 14 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Demo: R Extensions

15 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 15 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 15 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 15 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Implementation Details  General approach  Spotfire writes data to a tab-delimited file  R reads the data, does some processing, and writes results to a tab-delimited file  Spotfire reads the tab-delimited file  The C# code  On the C# side, most of the code is somewhat generic code for invoking some general process and communicating to it via text files  The only R-specific code is that related to what “Process” is invoked  The R code  A general R template script handles the data exchange and errors  Each type of extension has an R script, e.g. “Create Column”  Varying values such as file names or R expressions are inserted into the script as “spotfire.parameters”

16 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 16 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 16 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 16 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level C# Process Code File.WriteAllText(generatedScriptFile, masterScript); string args = string.Format("CMD BATCH {0} {1} {2}", batchOptions, scriptFileName, stdoutFileName); string rExecPath = RCalculationUtilities.GetRExecutableFilePath(); ProcessStartInfo info = new ProcessStartInfo(rExecPath, args); info.WorkingDirectory = sessionDir; info.WindowStyle = ProcessWindowStyle.Hidden; try { using (Process rProc = Process.Start(info)) { rProc.WaitForExit(); if (rProc.ExitCode > 1) { string errorMsgFileName = Path.Combine(sessionDir, "errormsg.txt"); if (File.Exists(errorMsgFileName)) { errorMsg = File.ReadAllText(errorMsgFileName); }

17 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 17 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 17 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 17 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level R Master Template # If an error occurs, quit with a non-zero status code options(error = expression({{cat(geterrmessage(), file="errormsg.txt");q(status=100)}})) # Parameters for passing settings other than data to R. spotfire.parameters <- {1} # Load data spotfire.inputFilename <- "{2}" spotfire.data <- read.delim(spotfire.inputFilename, check.names = FALSE) # BEGIN User defined script {0} # END User defined script # Save results spotfire.outputFilename <- "{3}" write.table(spotfire.results, file = spotfire.outputFilename, sep = "\t", na = "", row.names = FALSE)

18 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 18 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 18 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 18 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level R Extension Scripts ## R objects used: ## ## spotfire.data: data.frame passed from Spotfire to R ## spotfire.parameters: named character vector of parameters ## spotfire.results: data.frame passed from R to Spotfire ## ## Note: Error and special-case handling code left out for space reasons # Example 1: Load the data from an Rdata file spotfire.results <- get(load(file = spotfire.parameters["FilePath"])[1]) # Example 2: Execute an expression creating a data.frame expr <- spotfire.parameters["DataFrameCreationExpression"] spotfire.results <- eval(parse(text=expr)) # Example 3: Execute an expression creating a column expr <- spotfire.parameters["CreateColumnExpression"] spotfire.results <- with(spotfire.data, eval(parse(text=expr)))

19 © 2006 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 19 © 2005 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 19 © 2008 TIBCO Software Inc. All Rights Reserved. Confidential and Proprietary. 19 ____ __ ____ _____ ____ ______ _____ _____ ____ _____ Click to edit Master text styles Second level Third level Summary  Spotfire is a useful tool for interactive data visualization  R provides rich computational capabilities for Spotfire users  The Spotfire SDK makes it easy to integrate the two  Simple communication via text files and a child process works pretty well


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