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1 TreeJuxtaposer side by side comparison of evolutionary trees.

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Presentation on theme: "1 TreeJuxtaposer side by side comparison of evolutionary trees."— Presentation transcript:

1 1 TreeJuxtaposer side by side comparison of evolutionary trees

2 2 Phylogenetic/Evolutionary Tree M Meegaskumbura et al., Science 298:379 (2002)

3 3 Common Dataset Size Today M Meegaskumbura et al., Science 298:379 (2002)

4 4 Future Goal: 10M node Tree of Life David Hillis, Science 300:1687 (2003) Plants Protists Fungi Animals You are here

5 5 Paper Comparison: Multiple Trees focus context

6 6 Accordion Drawing rubber-sheet navigation –stretch out part of surface, the rest squishes –borders nailed down –Focus+Context technique integrated overview, details –old idea [Sarkar et al 93], [Robertson et al 91] guaranteed visibility –marks always visible –important for scalability –new idea [Munzner et al 03]

7 7 7 Guaranteed Visibility marks are always visible easy with small datasets

8 8 Guaranteed Visibility Challenges hard with larger datasets reasons a mark could be invisible

9 9 Guaranteed Visibility Challenges hard with larger datasets reasons a mark could be invisible –outside the window AD solution: constrained navigation

10 10 Guaranteed Visibility Challenges hard with larger datasets reasons a mark could be invisible –outside the window AD solution: constrained navigation –underneath other marks AD solution: avoid 3D

11 11 Guaranteed Visibility Challenges hard with larger datasets reasons a mark could be invisible –outside the window AD solution: constrained navigation –underneath other marks AD solution: avoid 3D –smaller than a pixel AD solution: smart culling

12 12 Guaranteed Visibility: Small Items Naïve culling may not draw all marked items GVno GV Guaranteed visibility of marks No guaranteed visibility

13 13 Guaranteed Visibility: Small Items Naïve culling may not draw all marked items GVno GV Guaranteed visibility of marks No guaranteed visibility

14 14 Structural Comparison rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish bird lungfish salamander frog mammal turtle snake lizard crocodile

15 15 Matching Leaf Nodes rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish bird lungfish salamander frog mammal turtle snake lizard crocodile

16 16 Matching Leaf Nodes rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish bird lungfish salamander frog mammal turtle snake lizard crocodile

17 17 Matching Leaf Nodes rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish bird lungfish salamander frog mammal turtle snake lizard crocodile

18 18 Matching Interior Nodes rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish bird lungfish salamander frog mammal turtle snake lizard crocodile

19 19 Matching Interior Nodes rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish bird lungfish salamander frog mammal turtle snake lizard crocodile

20 20 Matching Interior Nodes rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish mammal lungfish salamander frog bird turtle snake lizard crocodile

21 21 Matching Interior Nodes rayfinned fish lungfish salamander frog mammal turtle bird crocodile lizard snake rayfinned fish bird lungfish salamander frog mammal turtle snake lizard crocodile ?

22 22 Similarity Score: S( m,n ) T1T1 T2T2 A B C D E F A C B D F E m n

23 23 Best Corresponding Node –computable in O(n log 2 n) –linked highlighting T1T1 T2T2 A B C D E F A C B D F E m BCN(m) = n 1/3 2/3 2/ /2

24 24 –Matches intuition Marking Structural Differences T1T1 T2T2 A B C D E F A C B D F E m n

25 25 TreeJuxtaposer video, software from olduvai.sourceforge.net/tj


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