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Beyond the Basics Jaleh Gholami MD,MPH, PhD candidate Beyond the Basics Jaleh Gholami MD,MPH, PhD candidate.

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Presentation on theme: "Beyond the Basics Jaleh Gholami MD,MPH, PhD candidate Beyond the Basics Jaleh Gholami MD,MPH, PhD candidate."— Presentation transcript:

1 Beyond the Basics Jaleh Gholami MD,MPH, PhD candidate Beyond the Basics Jaleh Gholami MD,MPH, PhD candidate

2 Accuracy of research The inferences made from results of epidemiologic research depends on the accuracy of its methods and procedures.

3 Quality Assurance & Quality Control Quality Assurance The activities to ensure quality of the data before data collection are regarded as quality assurance. Quality Control: The efforts to monitor and maintain the quality of data during the conduct of the study are regarded as quality control.

4 Study protocol : consist of a description of the general components of the investigation (10 steps). Quality Assurance

5 1.Formulation of studys main hypothesis/ hypotheses (QA) 2.A priori specification of potential confounding variables (QA). 3.Definition of the characteristics of the study population for external validity (generalizability) purposes (QA). 4.Definition of the design strategy (e.g., cohort, case- control, case-cohort) and the groups to be compared, and specification of selection procedures of internal validity. (QA) 5.Definition of the design strategy and samples for studies of reliability and validity (QA/QC) Key features of the design of an epidemiologic study

6 6.specification of the study power necessary to detect the hypothesized association(s) at a given level of significance (QA). 7.standardization of procedures (QA) 8.activities during data collection, including analysis of quality control and remedial actions (QC). 9.Data Analysis 10.Reporting of data Key features of the design of an epidemiologic study

7 1.Formulation of studys main hypothesis/ hypotheses (QA) Specify: – the independent variable(risk factor) – the dependent variable (disease) – the potential effect modifiers

8 Key features of the design of an epidemiologic study 2. A priori specification of potential confounding variables (QA). Review of pertinent literature helps: – identifying the main confounding variables – choosing the most appropriate study design – selecting the data that need to be collected.

9 Key features of the design of an epidemiologic study 3. Definition of the characteristics of the study population for external validity (generalizability) purposes (QA). – Whether findings are applicable to other population (distribution of effect modifiers and population characteristics).

10 4. Definition of the design strategy (e.g., cohort, case-control, case-cohort) and the groups to be compared, and specification of selection procedures of internal validity. (QA) - prevention of selection bias, search for confounders,.. Key features of the design of an epidemiologic study

11 5. Definition of the design strategy and samples for studies of reliability and validity (QA/QC) - gold standard and samples for studies of repeat measurements. Key features of the design of an epidemiologic study

12 6. specification of the study power necessary to detect the hypothesized association(s) at a given level of significance (QA). - sample size determinant to have sufficient power at a given alpha error level. Key features of the design of an epidemiologic study

13 7. standardization of procedures (QA) - preparation of written manuals that contain a detailed description of the procedures for selection of the study population and data collection, as well as training and certification of staff. Key features of the design of an epidemiologic study

14 8. activities during data collection, including analysis of quality control and remedial actions (QC). - ongoing monitoring of data collection procedures, as well as conducting studies on samples to assess validity and reliability of measurements, which may result in retraining and recertification of study staff. Key features of the design of an epidemiologic study

15 9. Data Analysis - establish analytic strategies in advance (e.g., the choice of "cutoff" points) Key features of the design of an epidemiologic study

16 10. Reporting of data - findings should be reported as soon as possible after data collection activities are finished so as to preserve the timeliness of the study.To void publication bias, data should be reported regardless of the direction of findings. Key features of the design of an epidemiologic study

17 Study protocol : – provides a global picture of the strategies – leads to the development of more detailed manuals of operation – describes the general design and procedures – and assists the staff in understanding the context in which their specific activities are carried out Quality Assurance

18 Manuals of operation: – detailed descriptions of exactly how the procedures specific to each data collection activity are to be carried out : Measurements Interviews Categorizations Derived variables – maximizes the likelihood the tasks will be performed as uniformly as possible (esp., in multicenter studies) Quality Assurance

19 Data collection instrument: – Questionnaires: Development or choice or modification the previously used one? Validity and reliability are sometimes known Comparing findings of the study with those of previous studies Quality Assurance

20 Training of staff: – Familiarizing them with the procedures under his or her responsibility – data collection – processing procedures – setting up appointments for interviews or visits – preparing materials for the interviewers and other data collectors – calibrating instruments – assigning interviewers to study participants – certification of the staff member to perform the specific procedure – periodic retraining and recertification (QC) Quality Assurance

21 Pretesting and pilot studies: feasibility and efficiency pretest: to try to assessing specific procedures on a grab or convenience sampling in order to detect major flaws. pilot study: is a formal rehearsal of study procedures that attempt to reproduce the entire flow of operations in a sample as similar as possible to study participants. Quality Assurance

22 Assess participant recruitment Assess data collection procedures A questionnaire can assessed: – flow of questions – presence of sensitive questions – appropriateness of categorization of variables – clarity of wording to the respondent and the interviewer – clarity of the "question- by­ question" instructions to the interviewer Evaluating alternative strategies for participant recruitment and data collection Pretesting and pilot studies

23 Quality assurance Steps: Specify study hypothesis. Specify general design (study protocol) Choose or prepare instruments, develop procedures for data collection and processing (Develop manuals) Train staff, Certify staff. Using certified staff, pretest and pilot-study data collection and processing instruments and procedures; pilot-study alternative strategies for data collection Quality Assurance

24 Quality control Quality control strategies include observation of procedures performed by staff members, which allows the identification of obvious protocol deviations.

25 Observation Monitoring and Monitoring of Trends "over-the-shoulder" observation statistical assessment of trends over time, after adjustment for age, sex, and other relevant characteristics, for each technician or observer digit preference (e.g. age, blood pressure) external or internal standards (e.g. lab data)

26 statistical assessment

27 digit preference

28 Validity studies A compromise between accuracy on the one hand and costs and participants' burden on the other is often necessary.

29 Validity studies Validity studies in subsamples of participants who undergo both the study-wide procedure and a more accurate procedure serving as a "gold standard" allow assessing the impact of these errors on the study estimates.

30 laboratory Measurements External quality control program conducted in a masked fashion. using the same biological (e.g., serum) pool to compare measurements obtained from applying study procedures with those resulting from the application of the gold standard procedures. The biological pool can be external or internal to the study.

31 laboratory Measurements

32 Example: serum cholesterol Screening measurements: blood obtained by the finger stick method in a non­fasting state Gold standard measurements: The standard measurements were done in fasting state under carefully controlled conditions and assayed in a nationally recognized standard laboratory

33 temporal drift: differential bias over time

34 Questionnaires Comparing with the gold standard: – information given by participants and physicians about treatment – food frequency questionnaire and a 1-week diet diary It is important to assess samples of both "positive" and "negative" answers (estimation of both sensitivity and specificity) and collect Information separately for the groups being compared (cases and controls or exposed and unexposed) to evaluate misclassification (nondifferential or differential)

35 Availability of Validity Data from Previous Studies National Health and Nutrition Examination Survey III (NHANES III): the actual blood pressure levels measured (gold standard) and reports of antihypertensive medication use (self-reported hypertension) Lipid Research Clinics (LRC) Family Study: self- reported anthropometric variables in participants, whose weights and heights were both self-reported and measured.

36 Importance of Validity Studies the knowledge of the validity of exposure, outcome, main confounding variables, and effect modifiers is important in the causal inferential process. many variables, even those considered "objective," have a relatively poor validity. (sensitivity and specificity)

37 Limitations of Validity Studies 1.the "gold standard" itself may not be entirely valid. 2.validity studies samples frequently constitute a selected group of volunteers (may not be representative). 3.usually small sample size of validity studies resulting statistical imprecision. 4.sensitivity and specificity of the procedure may vary according to certain characteristics of the study population. 5.extrapolating the results of a validation study from one population to another, particularly if the data collection instrument is a questionnaire.

38 conclusion Then the "corrected" estimate may be even less "correct" than the original one.

39 Reliability Studies reliability studies assess the extent to which results agree when obtained by – different observers, – study instruments or procedures, or by the same observer, – study instrument, or procedure at different points in time. Ideally, the only source of variability in a study should be that between study participants.

40 Other sources of variability 1.Variability due to imprecision of the observer or the method, which can be classified in two types: – Within-observer (or intra-observer) or within- method variability, – Between-observer (or interobserver) or between- method variability 2.Variability within study participants

41 Within individual variability

42 Control the variability quality assurance procedures prevent or minimize within- and between-observer or method variability physiologic within-individual variability is not amenable to prevention. Solution: – standardizing the timing of data collection for measures with known temporal fluctuations (levels of cortisol or blood pressure) – standardizing measurement conditions for variables affected by stress or activity (blood pressure) – collect data at several points in time and use the average of all values.

43 Reliability studies obtaining random repeat measurements Masked or not?

44 Reliability study

45 misclassification If the sample size is of sufficient size, it is important to assess whether reliability estimates obtained for a sample of study participants differ according to relevant characteristics, which may result in differential levels of misclassification.

46 Indices of Validity and Reliability

47 Sensitivity and Specificity

48 Sensitivity and specificity are fixed properties of the test (or diagnostic criteria or procedure) itself, regardless of the characteristics of the study population. Do you agree on this?

49 Sensitivity and Specificity 1.dependence of sensitivity and specificity estimates on the cutoff level (arbitrariness in assessing and reporting the validity) 2.the sensitivity and specificity of a given definition of a condition (based on a cutoff in a continuous distribution) depend on the distribution of the severity of the condition.

50 Sensitivity and Specificity

51 3.The validity of a test can vary from population to population when the test is not a direct marker of the condition (OB and prevalence of Peptic ulcer, PPD and prevalence of atypical mycobacterium)

52 Sensitivity and Specificity 4.sensitivity and specificity can vary according to the characteristics of individuals (limitation to the generalizability). if these variables represent the exposures of interest or are correlated with them, differential misclassification may arise.

53 Sensitivity and Specificity

54 Youden 's J Statistic J = Sensitivity + Specificity Maximum value of the index =1 When there is perfect agreement Minimum value of the index =0 When sensitivity and specificity = 0.5 Theoretically the value of J can be negative

55 Percent Agreement % Agreement = ( ) / 100 = 80 % MD#1 YesNo MD#2 Yes No

56 Percent Agreement Although the percent agreement is a reliability indice, it can be also used to assess validity (the agreement between the test and gold standard) the simplest method of summarizing agreement for categorical variables it can be calculated for any number of categories, not just two

57 Percent Agreement

58 MD#1 YesNo MD#2 Yes13 No294 MD#1 YesNo MD#2 Yes433 No252 Percent Agreement Percent agreement= 95%

59 limitation of the percent agreement its values tend to be high whenever the proportion of negative-negative results is high (resulting from a low prevalence of positivity in the study population), particularly when the specificity is high.

60 Percent Positive Agreement Percent positive agreement: Chamberlains percent positive agreement:

61 Calculate PA, PPA, CPPA

62 Kappastatistic Kappa statistic kappa statistic is defined as the fraction of the observed agreement not due to chance in relation to the maximum nonchance agreement.

63 Example MD#1 YesNoTotal MD#2 Yes43346 No25254 Total

64 Calculate the expected values (chance) ACTUALMD #1 YesNo MD#2Yes46 No

65 Calculate the chance agreement and Kappa ACTUALMD #1 YesNo MD#2Yes No


67 KAPPA + 1 means that the two observers are perfectly reliable. They classify everyone exactly the same way. 0 means there is no relationship at all between the two observer s classifications, above the agreement that would be expected by chance. - 1 means the two observers classify exactly the opposite of each other. If one observer says yes, the other always says no.

68 Interpretation of Kappa

69 Weighted Kappa

70 weaknesses of Weighted Kappa The weights assigned to cells, although somewhat arbitrary, on the basis of the investigators' perception of how serious the disagreement is.

71 Dependence of Kappa on Prevalence

72 for the same sensitivity and specificity of the observers, the kappa value is greater in the population in which the prevalence of positivity is higher. kappa tends toward 0 as the prevalence approaches either 0 or 1.

73 conclusion comparisons of kappa values among populations may be unwarranted. kappa should be used and interpreted with caution. Use it in conjunction with other measures of agreement, such as the percent agreement. take into consideration its variability as a function of the prevalence of the condition and of the degree of similarity between observers with regard to the prevalence of positivity.

74 the 45° lines, intercept = 0, regression coefficient = 1.0 unit It is not as sensitive as alternative graphic techniques Indices of Validity/Reliability for Continuous Data: Correlation Graph (Scatter Diagram)

75 Pearson's r is probably one of the most frequently used measures of agreement for continuous variables. it is also one of the least appropriate! 1.It is insensitive to systematic differences (bias) between two observers or readings and it is misleading assessment of agreement. Correlation Coefficient

76 2.the value of r is very sensitive to the range of values. (broader distribution) 3.Pearson's correlation coefficient is unduly sensitive to extreme values (outliers) Correlation Coefficient

77 lntraclass Correlation Coefficient (ICC) or reliability coefficient (R) V b = variance between individuals V t = total variance V e = unwanted variance (error)

78 The ICC is equivalent to the kappa statistic for continuous variables. The range of ICC is from -1.0 (more realistically from 0) to ICC is affected by the range of values in the study population (like Pearson's correlation coefficient)when V b is small, ICC also will be small. This is particularly important in studies within populations in which the exposure values are either very high or very low. lntraclass Correlation Coefficient (ICC)

79 K is the number or repeat readings n is the number of individual studies or specimens being studied Calculation of ICC from ANOVA table

80 Coefficient of Variability This calculation would have to be repeated for all pairs of measurements, and the overall coefficient of variability would be the average of all pair-wise coefficients of variability.

81 Bland-Altman Plot

82 the difference between the paired measurements (A - B in the ordinate) and their mean value [(A + B)/2, in the abscissa). it is much easier to assess: – The magnitude of disagreement (including systematic differences) – Outliers – Any trend

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