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1 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Web Servicing the Biological Office ProTag, ProThesaurus.

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Presentation on theme: "1 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Web Servicing the Biological Office ProTag, ProThesaurus."— Presentation transcript:

1 1 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Web Servicing the Biological Office ProTag, ProThesaurus and LiMB Martin Szugat Bioinformatics group of the Ludwig-Maximilians-Universität München LFE Practical Computer Science and Bioinformatics With contributions from Daniel Güttler, Florian Sohler, Katrin Fundel, Ralf Zimmer Part of the HOBIT project Funded by Helmholtz-Gemeinschaft

2 2 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Motivation Task switching: Office Browser Copy & Paste: Name Identifier Protein name Information Database identifier

3 3 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Motivation Task switching: Office Browser Copy & Paste: Name Identifier Seamless Integration of the Web Context information at one click Protein name Information Database identifier

4 4 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Concept Markup Database identifier Free text

5 5 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Concept Database identifier Annotation Other identifiers Synonyms Web pages Web Services …

6 6 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Application: Smart Tags

7 7 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Implementation Download:

8 8 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Application: Office-Add-In

9 9 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Application: Standalone Application

10 10 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Application: Excel formulas and VBA Macros

11 11 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Extension: Write your own Actions or Services Add Web Service methods as custom Actions

12 12 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Extension: Write your own Actions or Services Integrate additional databases

13 13 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Extension: Write your own Actions or Services User commited protein names and identifiers

14 14 Martin Szugat, LMU Institut für Informatik, Teaching and Research Unit Bioinformatics, ECCB 05, Madrid Thanks for your attention! Open Questions? Coming soon: ProTag becomes open source:


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