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Carbohydrates, Lipids & Proteins. Carbohydrates General properties: –Hydrophillic (dissolve in water) –Generic chemical formula: (CH 2 O) n Glucose is.

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Presentation on theme: "Carbohydrates, Lipids & Proteins. Carbohydrates General properties: –Hydrophillic (dissolve in water) –Generic chemical formula: (CH 2 O) n Glucose is."— Presentation transcript:

1 Carbohydrates, Lipids & Proteins

2 Carbohydrates General properties: –Hydrophillic (dissolve in water) –Generic chemical formula: (CH 2 O) n Glucose is a 6-carbon sugar…C 6 H 12 O 6 –Generally have root names with sacchar as prefix, and/or -ose as suffix Glucose, sucrose, saccharide etc. Both sacchar- and –ose mean sugar/sweet in latin

3 Carbohydrates Monomeric sugar: the simplest form –Glucose, galactose (milk) and fructose All are chemically: C 6 H 12 O 6 All are isomers of one another (same chemicals make them up, but they are arranged into different shapes)

4 Carbohydrates Dimers of carbohydrates (2-monomers) –Sucrose, lactose and maltose Sucrose = table sugar Lactose = milk sugar Maltose…for malted beverages (beer etc.) –In the diet, complex polymers of carbohydrates are digested into dimers first These dimers are then digested into monomers on the surface of the absorptive cells in the intestine You cant absorb a dimer…you can only absorb a monomer –Lactose indigestion = no lactose digesting enzymes


6 Carbohydrates Polymers of carbohydrates (polysaccharides) –Long chains of sugar monomers –Can be quite large (can be seen with a microscope…can crystallize)

7 Carbohydrates Glycogen: –Liver is the primary body store for glucose (in the form of glycogen) After a meal, blood glucose rises (digestion and absorption of dietary carbohydrates) Liver receives insulin signal to remove blood glucose (to restore homeostasis) Liver polymerizes glucose into glycogen After a meal (like now), blood glucose drops (rest of the body uses up the glucose in the blood) Liver starts to break down glycogen into glucose and releases glucose into the blood (to restore glucose homeostasis)

8 Carbohydrates Glycogen: –Formation of glycogen (making the glucose tree) = gluconeogenesis or glucogenesis Glycogen anabolism/polymerization = glucogenesis / gluconeogenesis –Breaking down of glycogen (to free up glucose into the blood) = gluconeolysis NOT glycolysis or glucolysis (this is something different that well cover later) Catabolism/digestion of glycogen = gluconeolysis

9 Carbohydrates Starch: –Primary glucose storage form in PLANTS Made by photosynthesis (we make glycogen by using the energy in ATP) –The most significant source of dietary polysaccharides (carbohydrates)

10 Carbohydrates Uses: –Our bodies use carbohydrates (glucose) for ENERGY Any carbohydrates that are digested and absorbed are eventually formed into glucose (galactose and fructose are converted) –Additional uses: Attaching to proteins (glycoproteins…ie glycocalyx, etc.) Attaching to lipids in the plasma membrane (glycolipid)

11 Lipids General properties: –Water insoluble (water and oil dont mix) –Similar chemical formula to carbohydrate (C-H-O), BUT: VERY HIGH H:O ratio –Tristearin (fat) = C 57 H 110 O 6 (note how many more H there is than O)

12 Lipids 5 types of lipid: –Fatty acid (perhaps the most basic form…monomer) –Triglyceride (can also be thought of as a basic form…but its made of 3 fatty acids) –Phospholipid –Eicosanoid –Steroid

13 Lipids Fatty acid: –Chain of 4-24 Carbon atoms On one end of the chain is a carboxyl group (-COOH - ) On the other end is a methyl group (CH 3 ) –Thus…COOH - ----C-C-C-C-C-C------CH 3 - Carboxyl group (C+O+O+H) Methyl group (C+H+H+H)

14 Lipids Fatty acid: –Chain can be saturated or unsaturated Depends on the presence / absence of double covalent bonds (C=C, versus single C-C) –Saturated = NO double bonds (C-C throughout) –Unsaturated = at least 1 double bond (C=C somewhere along the chain) »Mono-unsaturated = single C=C bond »Polyunsaturated = 2 + C=C bonds

15 Lipids Fatty acid: –Chain can be saturated or unsaturated Presence of a C=C double covalent bond implies that you can add another C or anything else that can bind to the C=C –This is why mono- and polyunsaturated fats/oils are considered healthy…because your body can attach stuff to them…saturated fats/oils cant have anything more attached

16 Lipids

17 Fatty acid: –Most fatty acids can be made by your body/cells BUT, there are some essential fatty acids –we cannot make them (dont have the enzymes to make them) –Must be eaten or infused

18 Lipids Triglyceride: –3 fatty acids covalently bonded to a glycerol (looks like a trident or 3-pronged fork without the handle)

19 Dehydration synthesis 1.Remove OH - from the glycerol head (called a glycerol backbone) 2.Remove H + from the tails (3 fatty acids), 3.Attach the 3 fatty acid tails to the glycerol


21 Lipids Phospholipids: –Similar to triglyceride, but instead of 3 fatty acids, there are only 2 fatty acids A phosphate replaces the 3 rd fatty acid Imparts hydrophilic nature (phospholipid membrane) –Therefore, this kind of lipid is schitzophrenic »Has hydrophobic (fatty acids) domain »Has hydrophilic (phosphate) domain »Called amphiphilic


23 Triglyceride Phospholipid Vs. A phospholipid has 2 fatty acid tails, and 1 phosphate group. This phosphate group is hydrophilic (water friendly).

24 Lipids Phospholipids: –Important because every cell will be made of phospholipid If every cell in your body were to be made of pure fat/lipid, they would repel water…repel the ingredients in your blood –No contact with water = no way to get nutrients, no way to communicate…we

25 Lipids Eicosanoids: –All are derived from one single type of fatty acid (arachadonic acid) –Hormone-like signaling molecules –Example: prostaglandins Where the C-C chains are re-arranged into rings Important during inflammation –The recent COX-2 drug recall (Vioxx, Celebrex) were an attempt to permit prostaglandin synthesis but still give arthritis patients a working anti- arthritic drug

26 Lipids Steroids: –Primarily made in the liver –Not present/available in plants –BUT, despite no presence in plants, only about 15% of your total cholesterol is derived from your diet (liver makes the rest)

27 Lipids Cholesterol confusion/controversy –The advertising is actually incorrect … there isnt a good/bad cholesterol … The good/bad is actually a lipoprotein, not cholesterol –A complex bead of cholesterol, fat, phospholipid and protein –BAD: low density lipoprotein (LDL) = full of lipid, cannot be added to –GOOD: high density lipoprotein (HDL) = not full yet…body can still add to it

28 Lipids Cholesterol confusion/controversy –Remember the saturated and unsaturated fats (from the fatty acid slides)? It is actually saturated fat that is mislabeled as bad cholesterol rather than cholesterol itself

29 Proteins The most important molecules –Will make and break down carbohydrate –Will make and break down lipids –Will make and break down proteins

30 Proteins Polymers of amino acid –Amino acids are individual molecules made from a single carbon atom Each carbon atom has a carboxyl and amino side –Similar to a lipid, but instead of a methyl group (CH 3 ), there is an amino or nitrogen group (NH 3 ) There are 20 different amino acids –Structurally, they are almost identical (1 central Carbon, with carboxyl and amino groups) »Differences lie in a 2rd group (R-group) attached to the Carbon

31 Proteins Carbon Amino (NH 3 - ) Carboxyl (COOH - ) R-group (aka radical) Unique identifier Basic structure of amino acid

32 Proteins The 20 amino acids are unique from one another based on the R-group or radical attached to the carbon atom –This R-group can be hydrophobic (hydrophobic amino acid) –Can be hydrophilic (hydrophilic amino acid) –Some can be polar and others are non- polar

33 Proteins In order to polymerize amino acids (join them together), you need to form a peptide bond –Bond is formed by dehydration synthesis (just like carbohydrates and lipids) Remove the hydroxyl (OH - ) group from the carboxyl portion of 1 amino acid Remove the H + from the amino portion of the next amino acid Covalently bind the two amino acids together

34 Proteins



37 As you polymerize amino acids, just like with sugars/carbohydrates… –Dipeptide = 2 amino acids –Tripeptide = 3 amino acids –Oligopeptide = 10-15 amino acids –Polypeptide = more than 15 amino acids Remember: despite the length of the amino acid chain, there will be only 1 amino group and 1 carboxyl group on the ENTIRE chain –AND, they will be on opposite ends of the amino acid chain

38 Proteins Protein structure is VITAL –Different levels of protein structure Primary structure = amino acid sequence –Each protein is unique because of the order of the amino acids that are used to make it »Recall that there are 20 amino acids…each protein is a unique arrangement of these 20 amino acids

39 Proteins Protein structure is VITAL –Different levels of protein structure Primary structure = amino acid sequence Secondary structure = coiled or sheet-shape within the protein –Some amino acids can also interact with other amino acids by hydrogen bonds »This interaction often results in structures like an alpha helix ( -helix), or »Beta sheet ( -sheet) –Many proteins have BOTH -helix and -sheet »Some even have multiple -helices and - sheets

40 Proteins Recall that some amino acids are hydrophilic, and others are hydrophobic An -helix (like a tube) can arrange hydrophobic amino acids outwards, and place the hydrophilic amino acids INSIDE the helix, forming a water tube –This is important for many membrane transport proteins –The hydrophobic amino acids will interact with the lipid core of the plasma membrane –The hydrophilic amino aids can interact with the fluid environment outside/inside the cell


42 C C C C C C C C Vs. C C C C C C C Insulin Useless Tertiary structure: the entire protein shape (remember that a protein can have many alpha helices and beta sheets…many areas of secondary structure)

43 Proteins Thus, how you shape a protein is very important in how it works –If the protein is not shaped correctly, it will be useless Useless proteins = wasted energy to make them Useless proteins can also be quite dangerous (toxic)

44 Proteins What do they do? (hint…EVERYTHING) –Structure: for tissue structure & cell shape –Communication: hormones and receptors & other signaling proteins Hormones released by 1 cell can signal another cell (hormones are proteins) Hormone signals are received by receptors unique to each hormone (receptors are proteins) second messengers often utilize proteins

45 Proteins What do they do? –Membrane transport: Membrane transport proteins (ion channels, nutrient transporters, drug transporters) permit movement of molecules and compounds across a cell membrane –Catalysts: enzymes are specialized proteins Specialized for making or breaking bonds…chemical, carbohydrate, lipid, amino acid etc.) –Recognition and protection: immune recognition Recall how each cell in your body has a host identifier protein on its surface

46 Enzymes and metabolism Enzyme: specialized protein that catalyzes a reaction –Some older enzymes are still called by their original names Trypsin, pepsin etc. –More common/scientific names will identify: Substrate (what the enzyme works on)… ___-ase –Carbonic anhydrase (works on carbonic acid) »Anhydrase = remove water…remove water from carbonic acid –Amylase (works on amyl…starch)

47 Enzymes and metabolism Catalyze = help a reaction occur faster –Enzymes do not force a reaction…they allow it to occur with LESS energy The reaction that an enzyme catalyzes would occur naturally without that enzyme, BUT, you would need much more energy and much more time

48 Enzymes Enzymes are SPECIFIC…they ONLY work on particular ingredients, and ONLY produce specific products –You have specific enzymes for everything that needs to be anabolised and/or catabolised Enzymes recognize their substrates (the targets that they will either join or break apart) in an active site

49 Enzymes Active site: often relies on the specific arrangement of amino acids –Recall how they can interact at different levels of protein structure

50 Enzymes Enzymatic process: –Substrate binds to the specific binding site in the enzyme Forms an enzyme-substrate complex Like a lock and key –Enzyme will either join the substrates, or breaks them up (depending on the function of the enzyme)


52 Enzymes Key features of the enzymatic process: –The enzyme DOES NOT change during the process/reaction It might change shape, but the amino acid sequence remains the same –The enzyme can usually perform its function (breaking or binding) many times before breaking down (wear and tear) –This process isnt always the same length of time Some reactions require more energy and others…therefore take more time than others

53 Enzymes Enzymes must operate within: –Optimal pH (outside of the optimal pH, the enzyme can be denatured or lose its structure) Remember the importance of protein shape –Optimal temperature Too cold = not enough energy Too hot = denature structure –This is why pH and temperature homeostasis are so important Out of homeostasis = enzyme malfunction … metabolism malfunction

54 Enzymes Enzymatic activity can be altered by: –Altering the amount of substrate (more = faster…to a point) Like the difference between simple diffusion and carrier-mediated transport of a molecule across a semi-permeable membrane

55 Enzymes Some enzymes also need organic co-factors –Specifically, some require vitamins organic because they have carbon (C-C-C) bonds, but are not proteins –Vitamins or their derivatives (needed for some enzymes to work) are known as coenzymes –Vitamins are organic molecules (carbon- based) that are fortified or added to the first- world diets

56 Enzymes Some enzymes interact with other enzymes (require 1 enzyme to finish its task before it can start) –metabolic pathway where a number of enzymes work together AB Enzyme 1 CD Enzyme 2Enzyme 3 Intermediate reactions…. intermediates

57 In a metabolic pathway, having functional enzymes is VITAL for the final outcome –If one enzyme does not work, the following enzymes cannot do their task AB Enzyme 1 CD Enzyme 2 Enzyme 3 intermediates

58 Glycogen storage disease (liver disorder): –Recall the glycogen, the storage form of glucose, looks like a tree of glucose monomers –Each branch and leaf on that tree requires a particular enzyme hence glycogen production (gluconeogenesis) is a metabolic pathway –Glycogen storage disease has many forms: all stem from an individual defect in one of the many enzymes involved in building up the glycogen tree Without proper glycogen production, the patient usually suffers diabetes-like symptoms (inadequate blood-glucose homeostasis)

59 Without proper glycogen assembly, the entire glycogen molecule cannot be created. You then get this action….. Because the entire glycogen molecule cannot be assembled, blood glucose regulation is hindered

60 Enzymes in your body Various enzymes in your body do different things: –Hydrolase: digest/catabolise products Digest fats, proteins, carbohydrates, nucleic acids –Esterase –Carbohydrase –Protease –Nuclease –Decarboxylase removes CO 2 from substrates –Isomerase changes the shape of a substrate (isomer) –Deaminase removes NH 2 (amine)from a substrate –Dehydrogenase removes H from a substrate

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