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Option C - Human biochemistry C.1 Diet. C.1.1 Requirements of a Healthy Human Diet: Water: necessary for life, biochemical activities within the body.

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Presentation on theme: "Option C - Human biochemistry C.1 Diet. C.1.1 Requirements of a Healthy Human Diet: Water: necessary for life, biochemical activities within the body."— Presentation transcript:

1 Option C - Human biochemistry C.1 Diet

2 C.1.1 Requirements of a Healthy Human Diet: Water: necessary for life, biochemical activities within the body

3 Food groups: 1) milk group-milk, cheese, yoghurt -- >supplies calcium, protein, vit A&D 2) meat group-meat, fish, poultry, eggs, legumes, nuts --> iron, vit B,energy 3)vegetable and fruit group -->vit A&C 4)bread and cereal group -->energy, vit, minerals, protein

4 Carbohydrates source of calories (energy), glucose important in energy-producing cycles within cells. RDA

5 Proteins- enzymes to catalyze the body's chemical reactions, hormones, muscle, connective tissue

6 Fats (& oils)- concentrated source of energy RDA

7 Vitamins-

8 Minerals: Calcium- blood, cells, body fluids, bones (its absorption is enhanced by vit D) Magnesium- maintains the electric potential across nerve-and- muscle-cell membranes Phosphorus- bones & teeth Iodine- essential for functioning of thyroid gland Iron- hemoglobin, enzymes Zinc- part of important enzymes in the body

9 Importance of a Balanced Diet: -deficiency in caloric assumption results in deficiency diseases, starvation, or death -overnutrition results in obesity, high blood pressure, diabetes, heart attacks -excess in saturated fat consumption leads to rise in blood cholesterol levels- strokes -deficiency in protein and minerals- anemia, edema, loss of pigment and hair, retarded growth

10 C.1.2 Calories and Enthalpy of Combustion: -calories are the energy content of food -energy is stored in chem bonds that link atoms and molecules. Energy is captured by the body during biochemical reactions involving the combustion of nutrients. This energy is used to drive life processes of cells. Proteins and Carbohydrates- 4kcal/g Fat- 9kcal/g Alcohol- 7kcal/g

11 C.2 Proteins NH 2 C R1R1 CO H NHC R2R2 COOH H NH 2 C R COOH H amino acid 20 different types Amino acid PolypeptideProtein NH 2 C R1R1 COOH H NH 2 C R2R2 COOH H

12 C Amino Acids: -there are 20 different 2-amino acids -they contain an amine group (NH 2 ) on the central carbon atom (a), a carboxyl group and different R-groups. -all amino acids are optically active (not needed, but good to know)

13 Amino Acid

14 C.2.2 POLYPEPTIDES: -two amino acids join to form a dipeptide-- -the bond is called PEPTIDE BOND -condensation reaction: a hydroxyl group is lost from one of the amino acids' carboxyl group, while the other amino acid loses a H from its amine group. (again, a diagram would be good, but...) -amino acids join to form proteins

15 Dehydration Synthesis Lets see how amino acids combine to make proteins. Amino acids combine in the presence of an enzyme during dehydration synthesis. CC N H H H O O H R C C N H HH O OHR H2OH2O

16 Dehydration Synthesis The compound produced from the dehydration synthesis of two amino acids is a dipeptide. Water is also produced during the reaction. The bond between the carbon atom and the nitrogen atom is a peptide bond. A polypeptide is a long chain of amino acids containing many peptide bonds. Proteins can contain two or more polypeptide chains. CC N H HH O R CCN H HO OH R H2OH2O Peptide Bond

17 C.2.4 PROTEIN STRUCTURE: -PRIMARY: amino acids arranged in linear order 20 different amino acids: many combinations

18 PROTEIN STRUCTURE: - SECONDARY: -alpha helix:coil of polypeptides, with hydrogen bonds between the amide hydrogen atom in one peptide and the carbonyl oxygen atom of another peptide, at a distance of three amino acids. Coil chains are held together by DISULFIDE BONDS between adjacent chains. -beta-pleated sheet: a folded sheet, stabilized by hydrogen bonds between the chains. There are NO disulfide bonds in this structure.

19 Alpha Helix

20 Secondary Structure- Sheet OxygenNitrogen R Group Hydrogen Carbon Carbonyl C H Bond

21 PROTEIN STRUCTURE: TERTIARY- folded structure of chains of amino acids. 4 types of interactions 1) Ionic bonds between R+ and R- 2) H-bonds between partial - and partial + R- groups 3) Disulfide bonds 4) Hydrophobic interactions- non polar R-groups tend to stay close together because repelled polar substances surrounding proteins.

22 PROTEIN STRUCTURE:QUATERNARY : more than one polypeptide chain join to form a protein--several folded chains joined by disulfide bonds (eg. hemoglobin)

23 Quaternary Structure The classic example- hemoglobin B/T- Figure 3.7 END OF PART 1

24 Disulfide Bonding V/V/P- Figure 16.6

25 Protein Separations Paper Chromatography Electrophoresis

26 An Experiment… The solvent rises up the paper when the two touch. The spot on the filter paper contains four different amino acids. Watch what happens when the paper touches the solvent in the beaker…

27 Amino Acid Experiment Which amino acid is the most soluble in this solvent (1-4)? –Number 1 is the most soluble. It remains dissolved in the solvent longer than the other amino acids and travels farther up the paper. Which amino acid adheres most tightly to the paper (1-4)? –Number 4 sticks tightly to the paper and does not move as far as the other amino acids

28 Gel Electrophoresis Movement of charged molecules in an electric field. Polyacrylamide gel provides a porous matrix –(PAGE – Polyacrylamide Gel Electrophoresis) Sample is stained to make it visible in the gel. Sample placed in wells on the gel. Electric field across gel separates molecules. –Negatively charged molecules travel towards the positive terminal and vice-versa. Cheap, fast and easy!

29 1-D Gel electrophoresis Separation in only 1 dimension: size. Smaller molecules travel further through the gel – large ones get stuck earlier creating a separation.

30 1-D cont. DNA/RNA are stained with Ethidium Bromide which fluoresces under UV light. Protein stained with Coomassie Blue which is blue in visible light. Southern blots (DNA), Northern blots (RNA), Western blots (Protein). Proteins are treated with the denaturing detergent SDS (sodium dodecyl sulfate) which coats the protein with negative charges, hence SDS-PAGE.

31 C.2.5 FUNCTIONS: -structure, eg collagen (fibrous proteins) -biological catalysts (eg. enzymes) -transport eg. hemoglobin -energy source

32 Functional Classes of Proteins Receptors- sense stimuli, e.g. in neurons Channels- control cell contents Transport- e.g. hemoglobin in blood Storage- e.g. ferritin in liver Enzyme- catalyze biochemical reactions Cell function- multi-protein machines Structural- collagen in skin Immune response- antibodies

33 Structural Classes of Proteins 2. Fibrous Proteins (fibrils, structural proteins) One dominating secondary structure Typically narrow, rod-like shape Poor water solubility Function in structural roles (e.g. cytoskeleton, bone, skin)

34 Collagen: A Fibrous Protein V/V/P- Figures 6.17/18 Triple Helix Gly-Pro-Pro Repeat Stabilizing Inter-strand H-bonds

35 Structural Classes of Proteins 3. Membrane Proteins (receptors, channels) Inserted into (through) membranes Multi-domain- membrane spanning, cytoplasmic, and extra-cellular domains Poor water solubility Function in cell communication (e.g. cell signaling, transport)

36 C.3 Carbohydrates Contain the elements Carbon Hydrogen & Oxygen There are 3 types: Monosaccharides Disaccharides Polysaccharides

37 C.3.1 MONOSACCHARIDES: -all sugars that contain a single carbohydrate unit, with an empirical formula: CH 2 O -contain a carbolyl group (C=O), and at least two hydroxyl groups (-OH) -eg. -glucose, fructose, galactose

38 Monosacharides If n=3, triose (glyceraldehyde) If n=5, pentose (fructose, ribose) If n=6, hexose (glucose, galactose) Used for Energy and Building Blocks

39 C.3.2 GLUCOSE: -C 6 H 12 O 6 -a main source of energy -contains six carbons with an aldehyde group (H- C=O) on the first and hydroxyl groups on each of the remaining carbons -in water, the 2nd C and the 6th C form a bond, forming a cyclic structure -a-glucose: hydroxyl group on the sixth carbon is DOWN -b-glucose: it is UP

40 Isomerism They can exist as isomers: & glucose OH

41 Disaccharides Formed from two monosaccharides Joined by a glycosidic bond A condensation reaction: –glucose + glucose maltose –glucose + galactose lactose –glucose + fructose sucrose

42 C 3.3 Condensation reaction O CC C C C CO CC C C C C OH

43 Condensation reaction O CC C C C CO CC C C C C OHOHOH

44 Condensation reaction O CC C C C CO CC C C C C O H2OH2O

45 O CC C C C CO CC C C C C O A disaccharide 1,4 glycosidic bond 41

46 Polysaccharides Polymers formed from many monosaccharides Three important examples: –StarchStarch –GlycogenGlycogen –CelluloseCellulose

47 Starch Amylose -glucose 1,4 glycosidic bonds Spiral structure Amylopectin -glucose 1,4 and some 1,6 glycosidic bonds Branched structure

48 Glycogen Insoluble compact store of glucose in animals -glucose units 1,4 and 1,6 glycosidic bonds Branched structure

49 Cellulose Structural polysaccharide in plants -glucose 1,4 glycosidic bonds H-bonds link adjacent chains O O O O O

50 C.3.4 FUNCTIONS OF POLYSACCHARIDES: a number of monosaccharides joined together eg. Starch, a polymer of glucose, with formula (C 6 H 10 O 5 ) n eg. Glycogen, same molecular formula--gives glucose when hydrolised, stored in liver and muscles as a reserve of carbohydrates. (this is not needed)

51 -basic energy sources for living organisms -GLYCOGEN- an energy reserve, (stored in liver), can break down into glucose when it is needed -Precursors for other biologically important molecules---i.e. monosaccharides are used to make other molecules like glycerol and fatty acids and some amino acids. -Cellulose-structural material in plants (not in syllabus)

52 C.4 Fats

53 C.4.1 COMPOSITION OF FATS/OILS: -fatty acids: long chain of carbon and hydrogen atoms with a carbonyl group at the end (C=O) -TRIGLYCERIDES: molecules formed by the joining of three fatty acids to a molecule of glycerol by dehydration synthesis. -solid at room temperature-"fats"-and liquid at room temp- "oils" -PHOSPHOLIPIDS- similar to the above, but one or to of the fatty acids are replaced by a phosphate group, -ALL Fats are hydrophobic--contain a high proportion of C-H bonds, the carbonyl end of the molecule is hydrophilic

54 C.4.2 SATURATED/UNSATURATE D FATS: -SATURATED- fats with single bonds (no double bonds, not even one), C atoms can hold no more H atoms than they already have -UNSATURATED- fats with at least one double bond -the double bond causes fats (eg triglyceerides) to have a lower boiling point-the double bond tends to keep the fat flat-linear----usually oils at room temp

55 3 - Octenoic Acid 3, 6 - Octadienoic Acid Unsaturated Fatty Acids

56 Octanoic Acid Saturated Fatty Acids

57 C.4.3 FAT ADDITION REACTION: -The extent of unsaturation of a fat---tested by I2. By calculating the number of moles that react with a fat, the number of double bonds will be discovered. This is because the double bonds between C atoms are broken, and I bonds itself to the C. One I will bond to each former double- bond location--every molecule of I2 used indicates one double bond.Electrophillic addition R-C=C-R + I 2 ---> R-I-C-C-I-R -When the reaction occurs, the iodine will become clear.

58 Number of iodine (g) absorbed by 100 g of oil. Molecular weight and iodine number can calculate the number of double bonds. 1 g of fat adsorbed 1.5 g of iodine value 150. Iodine Number

59 Excess unreacted ICl Iodine Value Determination

60 C.4.4. SOAP: -Soap is made by the hydrolysis of fats. NaOH is added as a source of alkali. -3 Na+ are required to saponify one fat molecule (generally a triglyceride). These will replace the glycerol, yielding three fatty acids with an Na+ tail.

61 Saponification - hydrolysis of ester under alkaline condition. O C R O O O H 2 C O HC O H 2 C O NaOH H H H H 2 C O HC O H 2 C O R C O Na Saponification

62 C.4.5 FUNTIONS: -Energy source (self-explanatory) -Insulation (ditto) -Cell membrane-made up of phospholipids

63 Function of Lipids Formation of protective structures Metabolic reserve Structural component of cell organelles Hormones and signal compounds Vitamins

64 C.5 Vitamins

65 C.5.1 Role in Metabolism: -Metabolism- all of an organism's biochemical reactions -In order for reactions to take place in the body, catalysts are needed-these are called enzymes (see section on enzymes for more info) -Enzymes do not work alone, and sometimes require the help of coenzymes in order to carry out their catalytic functions-->vitamins function as coenzymes (mainly water soluble vitamins)

66 C.5.2 Water/Fat Soluble: -WATER- coenzymes needed in metabolism. eg. Vitamin B and C. when in excess, they pass out the body in urine -FAT-other functions in body (not clear) eg. Vitamin A and D. These can be stored in fat tissue These vitamins can accumulate to toxic levels

67 Functions: (structures listed in data-booklet)

68 Vitamin A (Retinol Vitamin A (Retinol)--at night, light shining on the eye strikes a receptor, rodopsin which sends an impulse to the brain. vit A is essential in the formation of rodopsin. Deficiency--night- blindness, xerophthalmia (tear glands cease to function)

69 Vitamin C Vitamin C (ascorbic acid)--essential in the formation of connective tissue-collagen. Works as a reducing agent to form one of the amino acids in the protein collagen Deficiency- scorbutus ("scurvy"- connective tissue breaks down, hemorrhage)

70 Vitamin D (calciferol) important in the production of a hormone involved in the metabolism of calcium. (2 -OH groups are added) and it functions as a hormone which causes the intestines to absorb calcium from food. Deficiency--rickets (weak bones, low blood calcium level)

71 Vitamin E

72 C.5.4 Food Processing: -most vitamins are destroyed or altered during cooking, especially water soluble vitamins. (fat soluble vit are relatively stable) -vit B is destroyed during milling processes

73 C.6 Hormones -organic molecules secreted by one part of the organism but having an effect on another. They are controlled by the pituitary gland, which is controlled by the hypothalamus. Secreted by endocrine glands.

74 C.6.1 Production/Roles: -ADRENALIN synthesized from amino acid Tyrosine:when exercise is done, impulses are sent for adrenaline to be released into the blood stream. It causes blood to be sent into areas of more active circulation. Increase in volume of blood available. Increase in rate of heart beat, stimulated respiration. the breakdown of glycogen to glucose is stimulated-raises level of sugar in the blood stream.

75 C.6.1 Production/Roles: -THYROXINE:: iodated amino acid derivative, produced by the thyroid gland :stimulates growth and metabolism INSULIN: made up of 2 poypeptide chains held together by disulfide bonds. Made in the pancreas by the Islet of Langerhorn. : regulates cellular intake of glucose from the blood. It is secreted in response to a rise in blood sugar or amino acid concentration. It also inhibits the breakdown of glycogen in the liver.

76 Female Sex Hormones pituitary hormones (LH and FSH) are secreted at puberty, Estrogen: (produced by ovary) stimulates an increase in secretion of a hormone, which brings about the maturation of the follicle and the ovulation. stimulates the development of female features: breasts, subcuataneous fat, menstrual cycle Porgesterone (corpus luteum of ovary)- stimulate the endometrium (lining of the uterus) to thicken and to secrete a nourishing fluid-in preparaton for a fertilized egg.

77 Male Sex Hormones *Male: Testosterone-hormone secreted by the testes and the sdrenal glands (above the kidneys). During puberty, the pituitary gland stimulates the release of a potein ABP, which has high affinity for testosterone. :stimulates development of male features: deepening of voice, development of male musculature, growth of hair on the face and other parts of the body.

78 C.6.2 Steroids: (see structure in data booklet) -a type of lipid (hydrophobic) -Structure: consist of four contiguous carbon rings (the common backbone) -Different steroids have different functional groups attached to the backbone.

79 Sterols

80 Steroids Based on a core structure consisting of three 6-membered rings and one 5-membered ring, all fused together Cholesterol is the most common steroid in animals and precursor for all other steroids in animals Steroid hormones serve many functions –salt balance –metabolic function –sexual development

81 Cortisol Testosterone Progesterone Estradiol Cholic acidDeoxycholic acid Steroid Hormone Structures cholesterol

82 Cholesterol Key lipid found in cell membranes Precursor to steroid hormones: Sexual Development estradiol testosterone Metabolic Regulation glucocorticoids Pregnancy progesterone Digestion Bile Acids

83 C.6.3 Oral Contraceptive: -the "pill" consists of estrogen and progesterone hormones (synthetic). The excess of these hormones (at a given dosage) will prevent ovulation, thus avoiding pregnancy. -Negative feedback control--The increased levels of estrogen inhibit the levels of LH hormone released by the pituitary gland. The drop in LH and FSH levels stops the development of the endometrium lining-without it the egg cannot implant and therefore no pregnancy will occur.

84 C.6.4 Steroid Use and Abuse:

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