Presentation on theme: "Important to recognize that metabolic need of individual cells is different from need of whole organism. Brain needs glucose even when body is starving."— Presentation transcript:
Important to recognize that metabolic need of individual cells is different from need of whole organism. Brain needs glucose even when body is starving. Liver will synthesize glucose via gluconeogenesis while brain uses glucose via glycolysis
Free energy A-B + C --- B-C + A If this reaction is displaced from equilibrium, some energy will be released as the reaction returns towards equilibrium. The energy released could be lost as heat or made to do work (ATP) Free energy ( G ) of a chemical reaction is a measure of its capacity to do work. It is related to conc of substrate and product G = -RTln[eqP]/[eqS]+RTln[initP]/[initS] If initial conc =1M, RTln[initP]/[initS]=0 You get G o =-RTlnK At equilibrium free energy change is zero Higher the substrate conc, lower the product conc, greater the G value.
Equilibrium At equilibrium, rate of forward and reverse reaction is identical A --- B No net flux in either direction A----- B---- At equilibrium No free energy change Change in free energy as a reaction proceeds towards equilibrium is the key driving force in biological processes. Equilibrium processes do not perform useful work (movement) Equilibrium processes can not be easily regulated Complex molecules (and processes) will not be made in large quantities under equilibrium conditions Biological systems obtain energy to prevent equilibriums from reaching.
Open and closed systems A-B + C --- B-C + A In a closed system, heat released will equal heat absorbed In an open system, heat released will be lost to environment, prevents the reaction from reaching equilibrium Furthermore, all free energy change is not lost as heat. Some is captured as chemical bond energy (ATP) A-B + C B-C + A /\ ADP+Pi ATP If all free energy change were captured as ATP, the reaction would be at equilibrium and there would be no net gain of ATP. However partial loss of energy as heat to the environment converts this reaction into a non equilibrium reaction allowing flux through the pathway towards ATP generation.
Dynamic steady state Living cells are NOT AT EQUILIBRIUM They maintain a DYNAMIC STEADY STATE Glucose enters cells, and CO2 leaves cell, but mass and composition of cell do not change appreciably. Cells appear to be but are not at equilibrium with surroundings. At molecular level each metabolic pathway is unidirectional and functioning. Rate of metabolic flow (flux) through the pathway is high, but concentration of substrate/intermediates/products remains constant. v1v2 A S P v1=v2 If this steady state is disrupted, by external change in energy etc, temporarily the fluxes through the pathway will change and regulatory mechanisms will be triggered and the organism will arrive at a new steady state to achieve homeostasis. Direction of flux in a pathway is dictated by position of equilibrium at each step of pathway
Steady State- all flows/fluxes are constant and unchanging. Living systems try and maintain a steady steady. An open system at steady state is at maximum thermodynamic efficiency. Changes in fluxes/flow require changes, which require energy. Changes in the environment result in perturbation of the steady state, and the organism responds and re-obtains new steady state. How are process maintained in non-equilibrium state? Exchange of matter and energy between organism and environment Substrates are derived from environment, products are returned to environment (Metabolic processes only attain equilibrium at death) Steady state
Flux and equilibrium 10/sec20/sec110/sec A< B < C < D 0.1/sec10/sec100/sec Some reactions are close to equilibrium other are obviously far from equilibrium All the reactions are sufficiently away from equilibrium so that the process is not at equilibrium While in theory all enzymes are regulated, activity of only certain enzymes regulate flux through the pathway Reactions are usually limited by the substrate (intermediate) conc. Therefore: Function of enzyme- Catalysis AND Monitoring state of pathway Via conc of substrates/products)
10 In this simple pathway, the intermediate B has two alternative fates. To the extent that reaction B E draws B away from the pathway A D, it controls that pathway.
Almost all steps in a pathway lose heat energy and are therefore displaced slightly from equilibrium. Most enzyme catalyzed reactions in metabolism operate close to equilibrium. In a few cases, they are not close to equilibrium. (Non equilibrium enzymes possess low catalytic activity so substrates accumulate and they will limit flux through pathway) These reactions will generate the greatest free energy change and produce the most work Riverdamsluice gatework turbines While to some extents all enzymes are regulated, the bottleneck enzymes are rate limiting and highly regulated. Enzymes and Equilibrium Substrate energy Product +ATP (equilibrium) Product + heat Product +ATP + heat (non-equilibrium) Product energy Energy loss as reaction proceeds
Enzymes working farthest from equilibrium are often used in regulation of a pathway because the reverse reaction is not easily attainable (would require a very great increase in conc of D to reverse the reaction) Natural bottlenecks! A ---- B ---- C D ---- E ---- F ---- G
Factors that affect flux Flux through pathway are regulated by 1Availability of substrate 2Conc of enzymes responsible for rate limiting step 3Allosteric regulation of enzyme (Feedback regulation) 4Covalent modification of enzyme 5Product removal Reduction in substrate will decrease activity of enzyme (provided enzyme is not saturated by substrate- most biological pathways operate at suboptimal conc of substrate) Removal of product enables reaction to proceed in a specific direction
14 At substrate concentrations far below the K m, each increase in [S] produces a correspondingly large increase in the reaction velocity, v. For this region of the curve, the enzyme has an of about 1.0. At [S] >> K m, increasing [S] has little effect on v; here is close to 0.0. Substrate concentration
15 Dependence of glycolytic flux in a rat liver homogenate on additional enzymes. Purified enzymes were added to an extract of liver carrying out glycolysis in vitro. The increase in flux through the pathway is shown on the y axis.
16 Mechanism of gene regulation by the transcription factor FOXO1. Insulin activates a signaling cascade, leading to activation of protein kinase B (PKB). FOXO1 in the cytosol is phosphorylated by PKB, and the phosphorylated transcription factor is degraded by proteasomes. Unphosphorylated FOXO1 can enter the nucleus, bind to specific gene promoters, and trigger transcription of the associated genes. Insulin therefore has the effect of turning off the expression of these genes, which include glucose 6-phosphatase.
19 Regulation of glucokinase by sequestration in the nucleus. The protein inhibitor of glucokinase is a nuclear protein that draws glucokinase into the nucleus when the enzyme is not required but releases it to the cytosol when the glucose concentration is high and the enzyme is required.
Protein phosphorylation and dephosphorylation.
Reversal of entire pathways Reversal of entire pathway of glycolysis is difficult. G o for glycolysis (glucose to pyruvate is -73 kJ/mol To do reverse reaction, you need to change product (pyruvate) conc many billion fold. Not feasible! Also reversing reaction leads to loss of ATP
Glycolysis Vs Gluconeogenesis Regulation of three irreversible steps Cell uses some enzymes from glycolysis in gluconeogenesis Reactions with small DG are used by both pathways. Reactions with large DG- regulated Pyruvate Glu G6P F6P F1,6P2 PEP Hexokinas e PFK1 Pyruvate Kinase Glucose 6-Phosphatase Fru 1,6 bisphosphatese1 PEP-carboxykinase Pyruvate carboxylase Oxaloacetate
Factors affecting enzymes
24 ATP requirement Effect of ATP concentration on the initial velocity of a typical ATP- dependent enzyme. These experimental data yield a K m for ATP of 5 mM. The concentration of ATP in animal tissues is ~5 mM.
Glucagon and insulin The three enzymes catalyze irreversible steps Concentration of these enzymes is regulated by hormones Insulin is secreted from pancreas ( -cells) when glucose levels in blood increase (Insulin promotes storage of energy). It induces transcription/translation of glucokinase, phosphofructokinase and pyruvate kinase (effects occur over hours) Glucagon is secreted from pancreas ( -cells) when blood glucose is low. It has opposite effects (induces release of glucose into blood)
Transporters Rate of entry of glucose into cells is regulated by transporters. Blood glucose level is 5mM Basal Glucose transporter in most cells has Km of 1mM. Less than blood glucose and so glucose is taken up easily. But in liver and pancreas glucose transporters have Km of ~15mM (close to blood glucose levels). This allows pancreatic cells to monitor glucose levels and thereby regulate insulin secretion. In liver cells, glucose is only taken up when it is very abundant. Then liver cells acquire glucose and convert it to glycogen and fatty acids.
Regulation of glucose LiverMuscle Blood glu high, (feeding) Glut2 takes up glu, Glucokinase induced G6P produced and used in glycolysis or stored Blood glu high, (feeding) Glut4 takes up glu, Hexokinase makes G6P If glycogen stores are filled, high G6P inhibits hexokinase. Blood glu low, (starving) Glut2 not taking up glu Glucokinase synthesis repressed G6P not made Blood glu low, (starving/resting) Glut4 taking up glu (little) Hexokinase is constitutively active If glycogen stores are filled, high G6P inhibits hexokinase. During exercise, Blood glu low/high Glut4 takes up glu (little/much) Low G6P, Hexokinase fully active High glycolysis from glycogen stores or blood glucose
Glucokinase and Hexokinase GlucokinaseHexokinase Kinetic parameter KmHigh (10mM)low (<0.1mM) low affinityhigh affinity Vmaxhighlow Tissue distnLiver, pancreas muscle and other tissues Blood glucose is 5mM Glucokinase activity increases with increased glucose but is not inhibited by increased glu6PO4. The levels of the protein are regulated by insulin. Rate of reaction is driven by substrate-glucose not by demand for product-G6P. Allows all glu available to be converted to G6P and then if excess present, it is converted to glycogen and from there to triglycerides and fatty acids Hexokinase activity increases with increased glucose but activity is inhibited by increased G6P. The levels of enzyme are constitutive. It only generates ATP when energy is required. Glucokinase is not normally active because its Km is lower than normal blood glucose levels. Eating food increases glu in blood, activates glucokinase which converts glu to glycogen and fatty acids.
Note the sigmoidicity for glucokinase and the much lower K m for hexokinase I. When blood glucose rises above 5 mM, glucokinase activity increases, but hexokinase I is already operating near V max and cannot respond to an increase in glucose concentration.
Control of glycogen synthesis from blood glucose in muscle. Insulin affects three of the five steps in this pathway, but it is the effects on transport and hexokinase activity, not the change in glycogen synthase activity, that increase the flux toward glycogen.
Regulation of PFK1 LiverMuscle Enzyme levels induced by insulin and reduced by starvation Allosterically activated by AMP (during exercise) F2,6,BP Allosterically inhibited by ATP (high energy state/resting) Citrate (high energy state- from Krebs cycle) (fatty acid oxidation) Constitutively on Allosterically activated by AMP (during exercise) Allosterically inhibited by ATP (high energy state/resting) Citrate (high energy state- from Krebs cycle) (fatty acid oxidation) Regulation of three irreversible steps PFK1 is rate limiting enzyme and primary site of regulation
PFK1 regulation by F2,6P2 PFK-2 catalyzes F6P + ATP -> F2,6P 2 + ADP PFK-2 allosterically activated by F6P and insulin (insulin induced dephosphorylation) High Glu- high F6P Therefore PFK2 active-- high F2,6P2 F2,6P2 activates PFK1 and you get high glycolysis and fat synthesis FBPase1
PFK2/FBPase2 F2,6P2 is made and degraded during metabolic transition Its conc determines whether you get gylcolysis or gluconeogenesis It is a positive allosteric effector of PFK1 It is a negative (inhibitor) of FBPase1 F2,6P2 is made and degraded by a SINGLE enzyme with two distinct domains having two distinct activities -kinase (PFK2) synthesizes F2,6P2 -bisphosphatase (FBPase2) degrades F2,6P2 PFK2/FBPase2 is regulated by metabolic factors/hormones F6P activates PFK2 and inhibits FBPase2 thus regulating level of F2,6P2
G6P F6P F1,6 P2 F2,6 P2 PFK1 FBPase1 PFK2/FBPase2 PEP In liver Lots of glucose, Lots of F6P made F6P activates PFK2 (also inhibits FBPase2) This makes more F2,6P2 F2,6P2 activates PFK1 (also inhibits FBPase1) This now makes more F1,6P2 When glucose levels drop and decrease F6P levels drop Inhibition of FBPase2 is reduced, F2,6P2 levels reduce. Lower levels of F2,6P2 reduced inhibition of FBPase1 and the reverse reaction now proceeds making more glucose. PFK2/FBPase2 is also regulated by phosphorylation by PKA and PP2A Phosphorylation- reduces PFK2 kinase activity and increases FBPase2 activity (generating more glucose) PKA is regulated by AMP. More AMP in cell means less ATP energy (i.e. less glucose) so liver makes more glucose to secrete into blood for other organs.
Coordinated Regulation of PFK-1 and FBPase-1 Both are inducible, by opposite hormones (insulin and glucagon) Both are affected by F2,6P 2, in opposite directions
Pyruvate dehydrogenase Pyruvate + CoA + NAD -> AcetylCoA + CO2 + NADH Glucose Amino acids Lactate PDH Acetyl CoAOxaloacetate CO2+H2OFatty acidKetoneTCA cycleGluconeogenesis
Regulation of PDH Muscle Resting (dont need energy) Hi energy state Hi NADH & AcCoA & ATP Inactivates PDH Hi ATP & NADH & AcCoA Inhibits PDH Exercising (need energy) Low NADH, ATP, AcCoA
Regulation of PDH Liver Just been Fed (high blood glucose) Need to convert glucose to Fatty acids Hi energy Insulin activates PDH Starved (dont need PDH) No insulin PDH inactive