Download presentation
Presentation is loading. Please wait.
1
ENA Browser 1 1 1 1
2
SRA Accessioning System ERAnnnnnn ERPnnnnnn
2 SRA Accessioning System ERAnnnnnn ERPnnnnnn NCBI DDBJ ERXnnnnnn ERZnnnnnn ERSnnnnnn SRA format ERRnnnnnn Standardised fastq confidential released Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up 2
3
Some Example Studies SRA Study: ERP : MicroRNA expression in primates II SRA Study: ERP : Antarctic Dry Valleys Seal Transplant SRA Study: ERP : Global assessment of genomic variation in cattle by genome resequencing and less high-throughput genotyping SRA Study: ERP : Global analysis of repetitive sequences in Silene latifolia using low-pass WGS data SRA Study: ERP : Tasmanian_Devil_Chromosome_sequencing SRA Study: ERP : New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
4
ENA Home Page http://www.ebi.ac.uk/ena/home
300 trillion bases vs 461 billion bases Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
5
ENA Text Search ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
6
ENA Text Search ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
7
ENA Text Search – sample objects
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
8
ENA Text Search – Queries are pre-run
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
9
Find the Study for an Overview
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
10
Find the Study for an Overview
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
11
Objects are addressed according to their Accession
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
12
The Primates Example …. (http://www.ebi.ac.uk/ena/data/view/ERP000973)
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
13
The Primates Example …. http://www.ebi.ac.uk/ena/data/view/ERS068325
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
14
The Primates Example …. http://www.ebi.ac.uk/ena/data/view/ERR050791
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
15
The Primates Example …. ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050791/ERR fastq.gz Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
16
You can transfer runs to a Galaxy Session
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
17
The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
18
The Primates Example …. ftp://ftp.sra.ebi.ac.uk/vol1/ERA064/ERA064394/fastq/GORILLA1_brain.txt.gz Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
19
The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
20
The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
21
The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
22
The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
23
Request Text and/or XML
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up
24
XMLs are Parse-able ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up
Similar presentations
© 2024 SlidePlayer.com Inc.
All rights reserved.