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ENA Browser 1 1 1 1.

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Presentation on theme: "ENA Browser 1 1 1 1."— Presentation transcript:

1 ENA Browser 1 1 1 1

2 SRA Accessioning System ERAnnnnnn ERPnnnnnn
2 SRA Accessioning System ERAnnnnnn ERPnnnnnn NCBI DDBJ ERXnnnnnn ERZnnnnnn ERSnnnnnn SRA format ERRnnnnnn Standardised fastq confidential released Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up 2

3 Some Example Studies SRA Study: ERP : MicroRNA expression in primates II SRA Study: ERP : Antarctic Dry Valleys Seal Transplant SRA Study: ERP : Global assessment of genomic variation in cattle by genome resequencing and less high-throughput genotyping SRA Study: ERP : Global analysis of repetitive sequences in Silene latifolia using low-pass WGS data SRA Study: ERP : Tasmanian_Devil_Chromosome_sequencing SRA Study: ERP : New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

4 ENA Home Page http://www.ebi.ac.uk/ena/home
300 trillion bases vs 461 billion bases Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

5 ENA Text Search ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up

6 ENA Text Search ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up

7 ENA Text Search – sample objects
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

8 ENA Text Search – Queries are pre-run
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

9 Find the Study for an Overview
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

10 Find the Study for an Overview
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

11 Objects are addressed according to their Accession
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

12 The Primates Example …. (http://www.ebi.ac.uk/ena/data/view/ERP000973)
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

13 The Primates Example …. http://www.ebi.ac.uk/ena/data/view/ERS068325
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

14 The Primates Example …. http://www.ebi.ac.uk/ena/data/view/ERR050791
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

15 The Primates Example …. ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR050/ERR050791/ERR fastq.gz Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

16 You can transfer runs to a Galaxy Session
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

17 The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up

18 The Primates Example …. ftp://ftp.sra.ebi.ac.uk/vol1/ERA064/ERA064394/fastq/GORILLA1_brain.txt.gz Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

19 The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up

20 The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up

21 The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up

22 The Primates Example …. ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up

23 Request Text and/or XML
Introduction SRA Data model ENA Browser SRA Submissions Compression Wrap up

24 XMLs are Parse-able ENA Browser Introduction SRA Data model
SRA Submissions Compression Wrap up


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