1. Updating image To update the background image: Go to ‘View’ Select ‘Slide Master’ Select the page with the image Right click on the image and select ‘Change picture’ Navigate to the location with the new image Select ‘insert’ Please note the new image needs to be at least 19cm x 27.5cm to fit the area. If the image does not fit you will need to manually manipulate the image to fit Data Citation at Scientific Data and Springer Nature Iain Hrynaszkiewicz Data Citation Implementation Pilot Workshop, Boston, 3 rd Feb 2016

2. 1 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Overview About Scientific Data Data citation at Sci Data (for humans) Capturing data citations Data citation at Sci Data (for machines) Benefits and challenges (lessons learned) Wider context NPG current approaches Springer current approaches BMC current approaches Future directions

3. 2 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc About Scientific Data

4. 3 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc The Data Descriptor article Sections: Title Abstract Background & Summary Methods Technical Validation Data Records Usage Notes Figures & Tables References Data Citations Peer-reviewed articles enabling authors to provide comprehensive methodological detail about their data. Does not contain tests of new scientific hypotheses.

5. 4 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Sci Data Data citation – for humans

6. 5 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc In-article data citation

7. 6 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc How do we capture the Data Citation? Authors provide text based on our guidelines http://www.nature.com/sdata/for-authors/submission-guidelines#datcit http://www.nature.com/sdata/for-authors/submission-guidelines#datcit Within the manuscript In the Data Citation section

8. 7 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc How do we capture Data Citations? During manuscript submission

9. 8 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Data not in repository at submission Option to use generalist repositories Dryad or figshare, if no subject specific repository available Peer reviewers asked whether data is in appropriate repository

10. 9 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Repositories available in submission system http://www.nature.com/sdata/data-policies/repositories

11. 10 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Oak Ridge National Laboratory Distributed Active Archive Center http://dx.doi.org/10.3334/ORNLDAAC/1292 http://dx.doi.org/10.3334/ORNLDAAC/1292</ext-link 2015 Law B. E. Berner L. T. Sci Data Data citation for machines

12. 11 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Oak Ridge National Laboratory Distributed Active Archive Center http://dx.doi.org/10.3334/ORNLDAAC/1292 http://dx.doi.org/10.3334/ORNLDAAC/1292</ext-link 2015 Law B. E. Berner L. T. Sci Data Data citation for machines JATS 1.0 Data citations list marked up as data citations “dummy” value designed to, in the future, support a tool to generate links to datasets in approved repositories from dataset IDs

13. 12 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Importance – Data citations of equal standing to references Evidence – Editorial process and rigour ensures data being described at Sci Data are consistently cited Unique and persistent – Sci Data only permits citations to approved repositories Interoperable and flexible – have used the same data citation process and style across all scientific disciplines Specific and verifiable – Sci Data asks authors of dynamic datasets to archive a copy of their data as it was at time of peer review, and data citations are created to both the static peer reviewed dataset and the dynamic dataset XML mark-up that is reasonably consistent with other JATS adopters JATS allows some variation between publishers (e.g. mixing data citations with standard references, or keeping them separate) Benefits of current approach

14. 13 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Data Citation at Sci Data – challenges More time required editorially – ensure robustness of data citations from many repositories and disciplines Authors often place data citations in main reference section or do not include them Data citation metadata – Authors, Title & “publisher/repository” are used in different ways by different resources E.g. Repository provides no title or authors/creators for dataset, but authors “invent” the info when citing Inconsistent repository names authors vs. metadata Dealing with articles with long lists of accession numbers Longer time required to define correct XML mark-up Current JATS implementation (1.1d3) caters for versioning of datasets, where discrete versions are published, but not for datasets that are continuously updated

15. 14 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Wider context and examples

16. 15 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc http://www.nature.com/nsmb/journal/v22/n11/abs/nsmb.3112.html#accessions Nature research journal accession codes

17. 16 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Data citation at Palgrave Communications JATS 1.0 Data citations in reference list, tagged as ‘other’

18. 17 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Example from SpringerLink (Mycological Progress) Mention in the references… DOI for Dryad (linked) and accession number for GenBank (not linked)

19. 18 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Example from GigaScience (BioMed Central)

20. 19 Updating footer To update the footer: Click into the text box on the slide master page and update the information Checking updates The text updates will not flow through to all the slide layouts as some have been placed manually. Therefore you may need to manually update other text boxes such as the divider slides etc Editorial policy development – more widely permit/encourage/require data citation Can we combine best of all approaches Not letting “best” be the enemy of “good” Data PIDs captured in manuscript tracking system to more efficiently create data citations Adopt JATS 1.1d3 to use improved mark-up; or Implement Data Citations in other DTDs Need scalable, standardised distinction between data generated, analysed and referenced datasets Solution to problem of very long lists of accession codes Define standards for linking to dynamic datasets Cross-publisher collaboration – it leads to better mark-up! Future directions

21. 20 [Title for presentation / Date to go here] Thank you Acknowledgements Varsha Khodiyar (Sci Data), Amye Kenall (BMC), Paul Donohoe (Springer Nature)